Frontiers | From one genome to many genomes: the evolution of computational approaches for pangenomics and metagenomics analysis

From one genome to many genomes: the evolution of computational approaches for pangenomics and metagenomics analysis

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ORIGINAL RESEARCH

Published on 04 Feb 2025

Choosing the most suitable NGS technology to combine with a standardized viral enrichment protocol for obtaining complete avian orthoreovirus genomes from metagenomic samples

Sonsiray Álvarez-Narváez
Telvin L. Harrell
Islam Nour
Sujit K. Mohanty
Steven J. Conrad

doi 10.3389/fbinf.2025.1498921

166 views

ORIGINAL RESEARCH

Accepted on 27 Jan 2025

MetaComBin: combining abundances and overlaps for binning metagenomics reads

Francesco Tomasella
Cinzia Pizzi

doi 10.3389/fbinf.2025.1504728

ORIGINAL RESEARCH

Published on 13 Nov 2024

Climatic factors, but not geographic distance, promote genetic structure and differentiation of Cleistogenes squarrosa (Trin.) Keng populations

Ruyan Song
Xueli Zhang
Zhuo Zhang
Chan Zhou

doi 10.3389/fbinf.2024.1454689

324 views

ORIGINAL RESEARCH

Published on 26 Sep 2024

Pangenome comparison via ED strings

Esteban Gabory
Moses Njagi Mwaniki
Nadia Pisanti
Solon P. Pissis
Jakub Radoszewski
Michelle Sweering
Wiktor Zuba

doi 10.3389/fbinf.2024.1397036

677 views

ORIGINAL RESEARCH

Published on 01 Jul 2024

Maximum-scoring path sets on pangenome graphs of constant treewidth

Broňa Brejová
Travis Gagie
Eva Herencsárová
Tomáš Vinař

Maximum-scoring path sets on pangenome graphs of constant treewidth

doi 10.3389/fbinf.2024.1391086

568 views

OPINION

Published on 19 Mar 2024

Sequencing technologies and hardware-accelerated parallel computing transform computational genomics research

Michael Olbrich
Lennart Bartels
Inken Wohlers

Sequencing technologies and hardware-accelerated parallel computing transform computational genomics research

doi 10.3389/fbinf.2024.1384497

1,303 views

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Frontiers in Bioinformatics

Genomic Analysis

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