Methods for Imaging and Omics Data Science: Advances, Applications, and Spatiotemporal Innovations

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ORIGINAL RESEARCH

Published on 19 Mar 2025

The research on the identification, taxonomy, and comparative genomics analysis of nine Bacillus velezensis strains significantly contributes to microbiology, genetics, bioinformatics, and biotechnology

Eduarda Guimarães Sousa
Gabriela Munis Campos
Marcus Vinícius Canário Viana
Gabriel Camargos Gomes
Diego Lucas Neres Rodrigues
Flavia Figueira Aburjaile
Belchiolina Beatriz Fonseca
Max Roberto Batista de Araújo
Mateus Matiuzzi da Costa
3 more
Vasco Azevedo

doi 10.3389/fmicb.2025.1544934

2,504 views

REVIEW

Published on 16 Dec 2024

Localization is the key to action: regulatory peculiarities of lncRNAs

Joice de Faria Poloni
Fábio Henrique Schuster de Oliveira
Bruno César Feltes

doi 10.3389/fgene.2024.1478352

1,322 views
1 citation

ORIGINAL RESEARCH

Published on 25 Apr 2024

Bayesian hidden mark interaction model for detecting spatially variable genes in imaging-based spatially resolved transcriptomics data

Jie Yang
Xi Jiang
Kevin Wang Jin
Sunyoung Shin
Qiwei Li

doi 10.3389/fgene.2024.1356709

1,412 views
3 citations

METHODS

Published on 20 Mar 2024

CGRWDL: alignment-free phylogeny reconstruction method for viruses based on chaos game representation weighted by dynamical language model

Ting Wang
Zu-Guo Yu
Jinyan Li

doi 10.3389/fmicb.2024.1339156

1,552 views
4 citations

METHODS

Published on 24 Jan 2024

RECCIPE: A new framework assessing localized cell-cell interaction on gene expression in multicellular ST data

Weiping Ma
Xiaoyu Song
Guo-Cheng Yuan
Pei Wang

doi 10.3389/fgene.2024.1322886

1,389 views
1 citation

ORIGINAL RESEARCH

Published on 09 Jun 2023

Clustering single-cell multimodal omics data with jrSiCKLSNMF

Dorothy Ellis
Arkaprava Roy
Susmita Datta

doi 10.3389/fgene.2023.1179439

3,480 views
1 citation

ORIGINAL RESEARCH

Published on 18 May 2023

SPARTIN: a Bayesian method for the quantification and characterization of cell type interactions in spatial pathology data

Nathaniel Osher
Jian Kang
Santhoshi Krishnan
Arvind Rao
Veerabhadran Baladandayuthapani

doi 10.3389/fgene.2023.1175603

3,151 views
6 citations

ORIGINAL RESEARCH

Published on 08 Mar 2023

Bayesian feature selection for radiomics using reliability metrics

Katherine Shoemaker
Rachel Ger
Laurence E. Court
Hugo Aerts
Marina Vannucci
Christine B. Peterson

doi 10.3389/fgene.2023.1112914

2,285 views
3 citations

ORIGINAL RESEARCH

Published on 06 Sep 2022

Multi-omics data integration for hepatocellular carcinoma subtyping with multi-kernel learning

Jiaying Wang
Yuting Miao
Lingmei Li
Yongqing Wu
Yan Ren
Yuehua Cui
Hongyan Cao

doi 10.3389/fgene.2022.962870

2,618 views
2 citations

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Frontiers in Genetics

Computational Genomics

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Frontiers in Microbiology
- Systems Microbiology
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Articles

The research on the identification, taxonomy, and comparative genomics analysis of nine Bacillus velezensis strains significantly contributes to microbiology, genetics, bioinformatics, and biotechnology

Localization is the key to action: regulatory peculiarities of lncRNAs

Bayesian hidden mark interaction model for detecting spatially variable genes in imaging-based spatially resolved transcriptomics data

CGRWDL: alignment-free phylogeny reconstruction method for viruses based on chaos game representation weighted by dynamical language model

RECCIPE: A new framework assessing localized cell-cell interaction on gene expression in multicellular ST data

Clustering single-cell multimodal omics data with jrSiCKLSNMF

SPARTIN: a Bayesian method for the quantification and characterization of cell type interactions in spatial pathology data

Bayesian feature selection for radiomics using reliability metrics

Multi-omics data integration for hepatocellular carcinoma subtyping with multi-kernel learning

Frontiers in Genetics

Computational Genomics

Participating Journals

Frontiers in Microbiology

Systems Microbiology