Frontiers in Toxicology | Computational Toxicology and Informatics

Original Research

Accepted on 30 Jan 2025

Comparing Computational Times for Simulations When Using PBPK Model Template and Stand-Alone Implementations of PBPK Models

in Computational Toxicology and Informatics

Amanda S Bernstein
Paul M Schlosser
Dustin F Kapraun

Frontiers in Toxicology

doi 10.3389/ftox.2025.1518769

Original Research

Accepted on 13 Jan 2025

TAME 2.0: Expanding and Improving Online Data Science Training for Environmental Health Research

in Computational Toxicology and Informatics

Alexis Payton
Elise Hickman
Jessie Chappel
Kyle R. Roell
Lauren E Koval
Lauren A Eaves
Chloe K Chou
Allison Spring
Sarah L Miller
Oyemwenosa N Avenbaum

Frontiers in Toxicology

doi 10.3389/ftox.2025.1535098

112 views

Review

Published on 08 Jan 2025

Validation framework for in vivo digital measures

in Computational Toxicology and Informatics

Szczepan W. Baran
Susan E. Bolin
Stefano Gaburro
Marcel M. van Gaalen
Megan R. LaFollette
Chang-Ning Liu
Sean Maguire
Lucas P. J. J. Noldus
Natalie Bratcher-Petersen
Brian R. Berridge

Frontiers in Toxicology

doi 10.3389/ftox.2024.1484895

539 views

Original Research

Published on 24 Dec 2024

An Adverse Outcome Pathway for food nanomaterial-induced intestinal barrier disruption

in Computational Toxicology and Informatics

Deborah Stanco
Dorelia Lipsa
Alessia Bogni
Susanne Bremer-Hoffmann
Laure-Alix Clerbaux

Frontiers in Toxicology

doi 10.3389/ftox.2024.1474397

448 views

Original Research

Published on 17 Oct 2024

A new approach methodology to identify tumorigenic chemicals using short-term exposures and transcript profiling

in Computational Toxicology and Informatics

Victoria Ledbetter
Scott Auerbach
Logan J. Everett
Beena Vallanat
Anna Lowit
Gregory Akerman
William Gwinn
Leah C. Wehmas
Michael F. Hughes
Michael Devito

Frontiers in Toxicology

doi 10.3389/ftox.2024.1422325

902 views

Original Research

Published on 01 Oct 2024

Workflow for predictive risk assessments of UVCBs: cheminformatics library design, QSAR, and read-across approaches applied to complex mixtures of metal naphthenates

in Computational Toxicology and Informatics

A. J. Prussia
C. Welsh
T. S. Somers
P. Ruiz

Frontiers in Toxicology

doi 10.3389/ftox.2024.1452838

744 views

Technology and Code

Published on 22 Jul 2024

Transforming environmental health datasets from the comparative toxicogenomics database into chord diagrams to visualize molecular mechanisms

in Computational Toxicology and Informatics

Brent Wyatt
Allan Peter Davis
Thomas C. Wiegers
Jolene Wiegers
Sakib Abrar
Daniela Sciaky
Fern Barkalow
Melissa Strong
Carolyn J. Mattingly

Frontiers in Toxicology

doi 10.3389/ftox.2024.1437884

1,321 views
1 citation

Methods

Published on 15 Jul 2024

sendigR: an R package to leverage the value of CDISC SEND datasets for cross-study analysis

in Computational Toxicology and Informatics

K. Snyder
C. M. Sabbir Ahmed
Md Yousuf Ali
S. Butler
Michael DeNieu
W. Houser
B. Paisley
M. Rosentreter
W. Wang
B. Larsen

Frontiers in Toxicology

doi 10.3389/ftox.2024.1392686

1,274 views
1 citation

Editorial

Published on 02 Jul 2024

Editorial: Next generation chemical risk assessment: integration of advances in toxicology, biology and computation

in Computational Toxicology and Informatics

Kan Shao
Chao Ji
Bernard Gadagbui

Frontiers in Toxicology

doi 10.3389/ftox.2024.1440229

748 views

Original Research

Published on 10 May 2024

The application of natural language processing for the extraction of mechanistic information in toxicology

in Computational Toxicology and Informatics

Marie Corradi
Thomas Luechtefeld
Alyanne M. de Haan
Raymond Pieters
Jonathan H. Freedman
Tamara Vanhaecke
Mathieu Vinken
Marc Teunis

Frontiers in Toxicology

doi 10.3389/ftox.2024.1393662

6,141 views
1 citation

Original Research

Published on 17 Apr 2024

Chemistry domain of applicability evaluation against existing estrogen receptor high-throughput assay-based activity models

in Computational Toxicology and Informatics

Mark D. Nelms
Todor Antonijevic
Caroline Ring
Danni L. Harris
Ronnie Joe Bever
Scott G. Lynn
David Williams
Grace Chappell
Rebecca Boyles
Susan Borghoff

Frontiers in Toxicology

doi 10.3389/ftox.2024.1346767

1,141 views
1 citation

Perspective

Published on 28 Mar 2024

Digitalization of toxicology: improving preclinical to clinical translation

in Computational Toxicology and Informatics

Brian R. Berridge
Szczepan W. Baran
Vivek Kumar
Natalie Bratcher-Petersen
Michael Ellis
Chang-Ning Liu
Timothy L. Robertson

Frontiers in Toxicology

doi 10.3389/ftox.2024.1377542

2,409 views
2 citations

Original Research

Published on 21 Mar 2024

A novel method to derive a human safety limit for PFOA by gene expression profiling and modelling

in Computational Toxicology and Informatics

Arthur de Carvalho e Silva
George D. Loizou
Kevin McNally
Olivia Osborne
Claire Potter
David Gott
John K. Colbourne
Mark R. Viant

Frontiers in Toxicology

doi 10.3389/ftox.2024.1368320

1,986 views
1 citation

Original Research

Published on 11 Mar 2024

Optimizing androgen receptor prioritization using high-throughput assay-based activity models

in Computational Toxicology and Informatics

Ronnie Joe Bever
Stephen W. Edwards
Todor Antonijevic
Mark D. Nelms
Caroline Ring
Danni Harris
Scott G. Lynn
David Williams
Grace Chappell
Rebecca Boyles

Frontiers in Toxicology

doi 10.3389/ftox.2024.1347364

1,153 views
1 citation

Mini Review

Published on 19 Jan 2024

Computational models for predicting liver toxicity in the deep learning era

in Computational Toxicology and Informatics

Fahad Mostafa
Minjun Chen

Frontiers in Toxicology

doi 10.3389/ftox.2023.1340860

3,699 views
3 citations

Original Research

Published on 17 Nov 2023

Mining toxicogenomic data for dose-responsive pathways: implications in advancing next-generation risk assessment

in Computational Toxicology and Informatics

A. Rasim Barutcu
Michael B. Black
Andy Nong

Frontiers in Toxicology

doi 10.3389/ftox.2023.1272364

2,013 views
2 citations

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Articles

Comparing Computational Times for Simulations When Using PBPK Model Template and Stand-Alone Implementations of PBPK Models

TAME 2.0: Expanding and Improving Online Data Science Training for Environmental Health Research

Validation framework for in vivo digital measures

An Adverse Outcome Pathway for food nanomaterial-induced intestinal barrier disruption

A new approach methodology to identify tumorigenic chemicals using short-term exposures and transcript profiling

Workflow for predictive risk assessments of UVCBs: cheminformatics library design, QSAR, and read-across approaches applied to complex mixtures of metal naphthenates

Transforming environmental health datasets from the comparative toxicogenomics database into chord diagrams to visualize molecular mechanisms

sendigR: an R package to leverage the value of CDISC SEND datasets for cross-study analysis

Editorial: Next generation chemical risk assessment: integration of advances in toxicology, biology and computation

The application of natural language processing for the extraction of mechanistic information in toxicology

Chemistry domain of applicability evaluation against existing estrogen receptor high-throughput assay-based activity models

Digitalization of toxicology: improving preclinical to clinical translation

A novel method to derive a human safety limit for PFOA by gene expression profiling and modelling

Optimizing androgen receptor prioritization using high-throughput assay-based activity models

Computational models for predicting liver toxicity in the deep learning era

Mining toxicogenomic data for dose-responsive pathways: implications in advancing next-generation risk assessment