- Centre for Applied Data Science, College of Business and Economics, University of Johannesburg, Johannesburg, South Africa
Infodemiologic methods could be used to enhance modeling infectious diseases. It is of interest to verify the utility of these methods using a Nigerian case study. We used Google Trends data to track COVID-19 incidences and assessed whether they could complement traditional data based solely on reported case numbers. Data on the Nigerian weekly COVID-19 cases spanning through March 1, 2020, to May 31, 2021, were matched with internet search data from Google Trends. The reported weekly incidence numbers and the GT data were split into training and testing sets. ARIMA models were fitted to describe reported weekly COVID cases using the training set. Several COVID-related search terms were theoretically and empirically assessed for initial screening. The utilized Google Trends (GT) variable was added to the ARIMA model as a regressor. Model forecasts, both with and without GTD, were compared with weekly cases in the test set over 13 weeks. Forecast accuracies were compared visually and using RMSE (root mean square error) and MAE (mean average error). Statistical significance of the difference in predictions was determined with the two-sided Diebold-Mariano test. Preliminary results of contemporaneous correlations between COVID-related search terms and weekly COVID cases reveal “loss of smell,” “loss of taste,” “fever” (in order of magnitude) as significantly associated with the official cases. Predictions of the ARIMA model using solely reported case numbers resulted in an RMSE (root mean squared error) of 411.4 and mean absolute error (MAE) of 354.9. The GT expanded model achieved better forecasting accuracy (RMSE: 388.7 and MAE = 340.1). Corrected Akaike Information Criteria also favored the GT expanded model (869.4 vs. 872.2). The difference in predictive performances was significant when using a two-sided Diebold-Mariano test (DM = 6.75, p < 0.001) for the 13 weeks. Google trends data enhanced the predictive ability of a traditionally based model and should be considered a suitable method to enhance infectious disease modeling.
Introduction
The coronavirus (COVID-19) pandemic has been arguably the most critical public health challenge of the 21st century. It has had more global and rapid spread since the first confirmed cases in China in December 2019. As of February 2022, more than 434 million cases and over 5.9 million fatalities have been documented worldwide, according to the John Hopkins University (Dong et al., 2020). The COVID-19 pandemic has led to enormous social and economic harm worldwide, including job loss, severe illness, and death (Pan et al., 2020).
The coronavirus pandemic did not spare the African continent—cases have already been reported in all 54 African countries. Nigeria, in particular, reported an index case of COVID-19 on February 27, 2020, making it the first in West Africa (NCDC, 2020). Since then, the Nigerian COVID-19 cases grew steadily to more than 250,000 cases and 3,000 deaths in February 2022 (Worldometer, 2022).
The outbreak of many infectious diseases in the current digital age, including the coronavirus, has led to significant interest in using digital epidemiology and big data tools to enhance disease surveillance and modeling. Digital epidemiology, otherwise known as infodemiology, uses digital data or online sources to gain insight into disease dynamics and inform public health policies (Eysenbach, 2009; Salathé, 2018). Data used for infodemiology, which may or may not have been intended for epidemiological purposes, can be retrieved from Twitter tweets, Facebook posts, or Google search queries. Many infodemiologic studies have demonstrated the usefulness of real-time data in health assessment (Van Lent et al., 2017; Wongkoblap et al., 2017; Farhadloo et al., 2018; Lu et al., 2018; Mavragani et al., 2018b; Xu et al., 2020). Some of these studies have been used explicitly for the monitoring and forecasting of epidemics, such as Zika (Farhadloo et al., 2018), Ebola (Van Lent et al., 2017) and influenza (Lu et al., 2018).
Google Trends (GT) is the most popular Big Data surveillance tool that helps researchers analyze temporal and geographical trends in online search terms or topics (Mavragani and Ochoa, 2018b; Mavragani et al., 2018a). The Google Trends platform evaluates the popularity of top Google Search queries across multiple locations and languages. It is highly used in healthcare research for multiple health topics—A recent systematic review (Nuti et al., 2014) identified 70 peer-reviewed health-related papers studying using GT data. Several studies have used Google trends data for monitoring and forecasting disease outbreaks, including the novel coronavirus (Carneiro and Mylonakis, 2009; Mavragani and Ochoa, 2018a; Zhang et al., 2018; Mavragani and Gkillas, 2020; Rovetta and Castaldo, 2020).
A recent study (Mavragani and Gkillas, 2020) explored the predictability of COVID-19 in the US using Google Trends data. They employed a bias-corrected quantile regression model, and their results exhibited strong COVID-19 predictability. Another study (Carneiro and Mylonakis, 2009) demonstrated tracking disease activity using the Google Trends tool. Zhang et al. (2018) predicted seasonal influenza outbreaks using Google Trends and ambient temperature, and they concluded that internet search metrics combined with temperature might be utilized to forecast influenza outbreaks. Teng et al. (2017) developed an autoregressive integrated moving average model for Zika virus using search data from Google Trends. They found a strong correlation between Zika-related searches and Zika cases.
This study explored the relationship between COVID-19 cases and online interest in the virus. First, a correlation analysis between Google Trends and COVID-19 data is performed. Next, the role of Google Trends data in the predictability of COVID-19 is explored using a predictive time series model. To the best of our knowledge, this paper is the first attempt of this kind performed for Nigeria.
Methods
Data
We downloaded weekly incidence numbers of COVID-19 in Nigeria from the Nigeria Centre for Disease Control (https://ncdc.gov.ng). Google Trends (https://trends.google.com/trends) was used to query normalized weekly volumes of COVID-related internet searches in Nigeria. Both datasets spanned through the period March 1, 2020–May 31, 2021. We included March 1, 2020, as the initial date since the first coronavirus case in Nigeria was reported on February 27, 2020. The official COVID-19 data and Google trends internet search data used in this study are open-source and did not require permission to use.
Data retrieved from Google Trends (GT) are normalized over a defined period. Search results are proportionate to the query's time and location. The resulting numbers are on a scale of 0–100 based on a topic's proportion to all searches on all topics. A more detailed description of how Google trends data are normalized can be found elsewhere (Google Trends, 2018).
Relative search volumes (RSVs) of 15 conceptually related COVID-19 terms were assessed for online interest and the variations compared. These terms were grouped into five distinct categories (see Table 1) and compared within each group. The considered search terms have the potential to capture a broad spectrum of information related to COVID-19 (Fulk et al., 2021; Satpathy et al., 2021).
The reported weekly incidence numbers and the GT data were split into training and testing sets. The training set included data from March 1, 2020, to February 28, 2021 (coinciding with the pre-vaccine arrival period), yielding 53 weeks of data. The test set included data from March 2, 2021–to May 31, 2021, yielding 13 weeks of data.
Analysis
First, we preliminarily assessed the relationship between the GT search terms and their relationships with the official COVID-19 data. In addition to line graphs, contemporaneous correlations were assessed with Spearman rank correlation analyses, with statistical significance set at the p < 0.05 threshold.
Next, we modeled the COVID-19 weekly series using an autoregressive integrated moving average (ARIMA) model, which has been used to model infectious disease outbreaks (Kane et al., 2014; Johansson et al., 2016; Kandula and Shaman, 2019; Xu et al., 2020). An ARIMA (p, d, q) model has order p, d, q, corresponding to the autoregressive, differencing and moving average terms, respectively. Let Yt denote the Nigerian COVID-19 cases on week t, the ARIMA (p, d, q) model can be given as
Where D is the difference operator, α is the intercept, β's and θ's are the autoregressive and moving average coefficients, respectively (Hyndman and Athanasopoulos, 2018).
An ARIMA model requires a stationary series; hence, the differencing (d) parameter is the number of times the series is differenced to make it stationary. The series stationarity was determined by a visual inspection of the time series plot and KPSS unit root test (Kwiatkowski et al., 1992). The AR and MA orders were identified from the autocorrelation function (ACF) and partial autocorrelation function (PACF) plots. An automatic stepwise algorithm verified the model identification by minimizing the corrected Akaike Information Criterion (AICc) (Hyndman and Khandakar, 2008). The best-fitting model was evaluated for model adequacy via residual diagnostic analyses. Normality of residuals was assessed with Quantile-Quantile (Q-Q) plots and Shapiro-Wilk's tests, while the ACF plot of residuals and Ljung-Box test was used for the independence of residuals.
We further develop an ARIMA model for the COVID-19 incidence by including GT for the search term(s) as a regressor. The chosen GT search terms significantly correlated (p < 0.05) with the official weekly cases. We performed short-term forecasts and compared them with the weekly cases in the 13-week test dataset. Prediction errors of the two models (with and without GT) were compared visually and using RMSE (root mean square error) and MAE (mean average error) values. Statistical significance of the difference in predictions was determined with the two-sided Diebold-Mariano test (Diebold and Mariano, 2002).
All statistical analyses were performed under R version 4.2.1 (R Core Team, 2020), using the forecast package version 8.4 (Hyndman and Khandakar, 2008).
Results
Figure 1 depicts Nigeria's online interest in grouped COVID-related queries from March 1, 2020, to February 28, 2021. In each group, online interest is relatively higher for “coronavirus,” “mask,” “fever,” and “lockdown.” For all the GT series, except “loss of smell” and “loss of taste”, we observed considerable peaks at the beginning of the pandemic (between the first 6 weeks) and relatively lower interests for the remainder of the series. The majority of the search terms in each group are moderately correlated (r ≥ 0.6) with each other (see Figure 2) and can be used interchangeably in further analyses.
Figure 1. Time plot of weekly GT RSVs for some COVID-19-related search terms in Nigeria. GT RSVs, Google Trends Relative Search Volumes; NPI, Non-pharmaceutical interventions.
Figure 2. Spearman correlations among GT data and the weekly COVID-19 cases in Nigeria. The blank spaces indicate insignificant correlations (p < 0.05).
The official weekly cases peaked in the third week of January 2021 (week 47). As shown in Figure 2, nine GT search terms showed significant contemporaneous correlations (p < 0.05) with the reported weekly cases, the strongest being “loss of smell” (r = 0.67, p < 0.001) (Figure 2). A further assessment of Figure 3 shows that the “loss of smell” GT series approximates the reported weekly cases in variation.
Figure 3. Time plot of weekly GT RSVs of “loss of smell” search term (the most strongly correlated) and the COVID-19 weekly cases in Nigeria. GT RSVs, Google Trends Relative Search Volumes.
An initial assessment of the time plot of the COVID-19 series shows it is non-stationary. A further verification via the KPSS test confirms the series' non-stationarity, thus requiring differencing. The first-differenced series, however, passed the stationarity test. The KPSS results are provided in the Supplementary material.
An examination of the ACF and PACF plots in Figure 4 suggests an ARIMA (2, 1, 0). This was confirmed by the automatic model selection procedure, which indicated ARIMA (2, 1, 0) as having the least AICc and providing the best fit to the data. A stepwise selection of the GT terms initially identified as significantly correlated with the reported weekly cases was performed, and their goodness of fit via AIC was assessed. Based on the results of the set of the independent variable(s) that minimized the AIC, the GT data for the search term “loss of smell” was then added as an external regressor to the ARIMA (2, 1, 0) model. Regarding model adequacy, the residuals were approximately normally distributed, and the ACF values were not significantly different from zero (Supplementary Figure S1). The Ljung-Box test result also suggests independence of the residuals (χ2 = 10.878; p-value = 0.2087). Therefore, there is sufficient evidence of the adequacy of the fitted model. The GT incorporated model performed better in terms of goodness of fit (AICc: 869.4 vs. 872.2) and forecast accuracy (Test set MAE: 340.1 vs. 354.9; Test set RMSE: 388.7 vs. 411.4). Model comparison results are presented in Table 2. Figure 5 compares the reported weekly cases with the forecast values from the two different models. Though the model predictions are similar in pattern, they are quite different in values. The two-sided Diebold Mariano test provided evidence of a significant difference (DM = 6.75, p < 0.001) in the predictive performance of the two models.
Figure 4. Plot of the autocorrelation and partial autocorrelation functions of the weekly COVID-19 cases.
Figure 5. l Forecasting of the optimal ARIMA Model (red curve) compared to the Google Trends enhanced Model (blue curve) and to the actual weekly COVID-19 cases (black curve).
Discussion
We examined the utility of online search data, via Google Trends (GT), for improving the forecasting accuracy of official COVID-19 cases, focusing on Nigeria. Little to no research evaluate the predictive performance of models based upon GT data for African contexts. Internet penetration in Africa, compared with other continents, remains low, and such a study, therefore, represents a significant contribution (Fulk et al., 2021).
Our preliminary results of the Spearman rank correlation analysis found that many (9 out of 15) search terms had significant contemporaneous correlations with the COVID-19 case numbers. Two previous studies (Mavragani and Gkillas, 2020; Satpathy et al., 2021) agree with the identified significant contemporaneous correlations. The inclusion of GT data significantly improved the predictive accuracy of the fitted ARIMA model.
Google Trends has proven extremely useful in researching widespread interest in health-related topics (Nuti et al., 2014), specifically infectious diseases (Carneiro and Mylonakis, 2009; Zhang et al., 2018; Mavragani and Gkillas, 2020; Rovetta and Castaldo, 2020). Notably, most of these studies (Nuti et al., 2014) only examined correlations between GT data and official incidence numbers. However, this study is of particular interest, given the relative paucity of GT studies in modeling or prediction. Only two studies (Ayyoubzadeh et al., 2020; Mavragani and Gkillas, 2020) modeled COVID-19 incidence from a further dissection of the GT studies that performed disease modeling. Mavragani and Gkillas (2020) employed a bias-corrected quantile regression model to explore the predictability of COVID-19 in the US using Google Trends data. Ayyoubzadeh et al. (2020) used Linear regression and long short-term memory (LSTM) models to predict COVID-19 incidence in Iran.
Our preliminary analyses revealed that symptoms search terms are more reliable correlates of COVID-19. We found loss of smell and taste as the most predictive symptom of COVID-19 infection. This agrees with the findings of Cherry et al. (2020). They demonstrated a clear association between COVID-19 cases and GT search terms relating to the loss of smell and taste on a regional, national, and international basis.
Here, we utilized ARIMA modeling due to its reputation as one of the most reliable time series analysis methods for infectious diseases (Allard, 1998; Song et al., 2016). Further, the ARIMA model is relatively straightforward and can be utilized by applied researchers with minimal modeling expertise. Other GT studies similar to ours used the seasonal version of the ARIMA model (SARIMA), which is ideal for seasonal conditions such as pertussis (Nann et al., 2021), tick-borne encephalitis (Sulyok et al., 2020), dengue fever (Wongkoon et al., 2012), malaria (Midekisa et al., 2012), and hepatitis E (Ren et al., 2013).
Compared to other Big Data platforms, the strength of Google Trends data lies in the ease of access. This study is not without limitations. The major limitation of this study is that there is no provision for the exact methodology for data generation, and the study population responsible for the searches cannot be determined. Therefore, we cannot control for possible confounders, including environmental and demographic factors that may impact search activity and COVID-19 incidence. More accurate and informative models could be developed if at least the absolute search frequency is available. Furthermore, related media activities can substantially influence search volumes, thereby lacking reliability with epidemiologic occurrence.
Selection bias is possible in obtaining RSV data since we used some selected COVID-19-related keywords, which may have been incomplete. Further research could aim to identify the most relevant set of keywords. These limitations point to the need to interpret this study's findings with caution. Despite the known limitations of online search data, its usage for informing public health and policy in general and monitoring outbreaks and epidemics, particularly, has received wide attention.
Conclusion
It is important to note that while the easy-to-obtain Google search data is a more dynamic and available source than traditional data sources, we have used the results from GT data to supplement the traditional data rather than replacing it. We tested whether the inclusion of GT data improves the routine epidemiologic methods. In conclusion, GT data correlate with the reported incidence of COVID-19 in Nigeria, significantly improving forecasting accuracy in the models based on traditional data. Efficient use of online search data could anticipate future rises in disease incidence and possibly more timely allocation of healthcare resources. Future studies can replicate this study with other data sets and forecasting methodologies. Modeling with different algorithms, analyzing data from other regions and countries, or even spatial analyses are potential future perspectives.
Data availability statement
The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found below: https://github.com/amusasuxes/gtrends/blob/main/gtrends.
Author contributions
LA designed the study, analyzed the data, and wrote the manuscript. CO assisted with some relevant literature. HT critically reviewed the manuscript and gave constructive comments, which improved the manuscript. All authors have read and approved the manuscript.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Publisher's note
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
Supplementary material
The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/frma.2022.1003972/full#supplementary-material
Abbreviations
GT, Google Trends; COVID-19, Coronavirus 2019; ARIMA, Autoregressive integrated moving average; RSV, Relative search volume.
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Keywords: Big Data, Google Trends, ARIMA, COVID-19, infectious disease modeling
Citation: Amusa LB, Twinomurinzi H and Okonkwo CW (2022) Modeling COVID-19 incidence with Google Trends. Front. Res. Metr. Anal. 7:1003972. doi: 10.3389/frma.2022.1003972
Received: 26 July 2022; Accepted: 30 August 2022;
Published: 15 September 2022.
Edited by:
Felix Bankole, University of South Africa, South AfricaReviewed by:
Ayankunle Taiwo, Schreiner University, United StatesKehinde Aruleba, University of Leicester, United Kingdom
George Obaido, University of California, San Diego, United States
Copyright © 2022 Amusa, Twinomurinzi and Okonkwo. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Lateef Babatunde Amusa, amusasuxes@gmail.com