Review

Published on 31 Dec 2012

Reverse Engineering: A Key Component of Systems Biology to Unravel Global Abiotic Stress Cross-Talk

in Plant Systems and Synthetic Biology

Swetlana Friedel
Bjoern Usadel
Nicolaus Von Wirén
Nese Sreenivasulu

Frontiers in Plant Science

doi 10.3389/fpls.2012.00294

12,806 views
35 citations

Original Research

Published on 07 Dec 2012

Give It AGO: The Search for miRNA-Argonaute Sorting Signals in Arabidopsis thaliana Indicates a Relevance of Sequence Positions Other than the 5′-Position Alone

in Plant Systems and Synthetic Biology

Christoph J Thieme
Christian Schudoma
Patrick May
Dirk Walther

Frontiers in Plant Science

doi 10.3389/fpls.2012.00272

8,943 views
28 citations

Original Research

Published on 16 Nov 2012

Compromise of Multiple Time-Resolved Transcriptomics Experiments Identifies Tightly Regulated Functions

in Plant Systems and Synthetic Biology

Sebastian Klie
Camila Caldana
Zoran Nikoloski

Frontiers in Plant Science

doi 10.3389/fpls.2012.00249

4,039 views
8 citations

Methods

Published on 15 Nov 2012

Visual Analysis of Transcriptome Data in the Context of Anatomical Structures and Biological Networks

in Plant Systems and Synthetic Biology

Astrid Junker
Hendrik Rohn
Falk Schreiber

Frontiers in Plant Science

doi 10.3389/fpls.2012.00252

7,900 views
6 citations

Mini Review

Published on 08 Nov 2012

Co-expression and co-responses: within and beyond transcription

in Plant Systems and Synthetic Biology

Takayuki Tohge
Alisdair R Fernie

Frontiers in Plant Science

doi 10.3389/fpls.2012.00248

6,609 views
30 citations

Original Research

Published on 29 Oct 2012

Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis)

in Plant Systems and Synthetic Biology

Ruth Grene
Curtis Klumas
Haktan Suren
Kuan Yang
Eva Collakova
Elijah Samuel Myers
Lenwood Scott Heath
Jason Holiday

Frontiers in Plant Science

doi 10.3389/fpls.2012.00241

5,843 views
10 citations

Perspective

Published on 29 Oct 2012

Correlation networks visualization

in Plant Systems and Synthetic Biology

Nicholas J. Provart

Frontiers in Plant Science

doi 10.3389/fpls.2012.00240

7,006 views
15 citations

Review

Published on 25 Sep 2012

RNA-Seq Assembly – Are We There Yet?

in Plant Systems and Synthetic Biology

Simon Schliesky
Udo Gowik
Andreas P M Weber
Andrea Braeutigam

Frontiers in Plant Science

doi 10.3389/fpls.2012.00220

23,870 views
91 citations

Original Research

Published on 25 Sep 2012

A Computational Framework for Evaluating the Efficiency of Arabidopsis Accessions in Response to Nitrogen Stress Reveals Important Metabolic Mechanisms

in Plant Systems and Synthetic Biology

Sabrina Kleessen
Alisdair R Fernie
Zoran Nikoloski

Frontiers in Plant Science

doi 10.3389/fpls.2012.00217

4,307 views
4 citations

Original Research

Published on 10 Sep 2012

Exploring the Shallow End; Estimating Information Content in Transcriptomics Studies

in Plant Systems and Synthetic Biology

Daniel J Kliebenstein

Frontiers in Plant Science

doi 10.3389/fpls.2012.00213

7,735 views
14 citations

Review

Published on 06 Sep 2012

Functional genomics tools applied to plant metabolism: a survey on plant respiration, its connections and the annotation of complex gene functions

in Plant Systems and Synthetic Biology

Wagner L. Araújo
Adriano Nunes-Nesi
Thomas Christopher Rhys Williams

Frontiers in Plant Science

doi 10.3389/fpls.2012.00210

7,135 views
8 citations

Opinion

Published on 02 Aug 2012

Systems Biology of Gibberellin Induced Plant Cell Growth

in Plant Systems and Synthetic Biology

Wagner L. Araújo
Alisdair R. Fernie

Frontiers in Plant Science

doi 10.3389/fpls.2012.00173

5,877 views
4 citations

Specialty Grand Challenge

Published on 22 Feb 2012

Grand Challenges in Plant Systems Biology: Closing the Circle(s)

in Plant Systems and Synthetic Biology

Alisdair Fernie

Frontiers in Plant Science

doi 10.3389/fpls.2012.00035

6,178 views
16 citations

Mini Review

Published on 31 Jan 2012

Model Misinterpretation within Biology: Phenotypes, Statistics, Networks, and Inference

in Plant Systems and Synthetic Biology

Daniel J Kliebenstein

Frontiers in Plant Science

doi 10.3389/fpls.2012.00013

5,519 views
3 citations

Navigation group

Articles

Reverse Engineering: A Key Component of Systems Biology to Unravel Global Abiotic Stress Cross-Talk

Give It AGO: The Search for miRNA-Argonaute Sorting Signals in Arabidopsis thaliana Indicates a Relevance of Sequence Positions Other than the 5′-Position Alone

Compromise of Multiple Time-Resolved Transcriptomics Experiments Identifies Tightly Regulated Functions

Visual Analysis of Transcriptome Data in the Context of Anatomical Structures and Biological Networks

Co-expression and co-responses: within and beyond transcription

Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis)

Correlation networks visualization

RNA-Seq Assembly – Are We There Yet?

A Computational Framework for Evaluating the Efficiency of Arabidopsis Accessions in Response to Nitrogen Stress Reveals Important Metabolic Mechanisms

Exploring the Shallow End; Estimating Information Content in Transcriptomics Studies

Functional genomics tools applied to plant metabolism: a survey on plant respiration, its connections and the annotation of complex gene functions

Systems Biology of Gibberellin Induced Plant Cell Growth

Grand Challenges in Plant Systems Biology: Closing the Circle(s)

Model Misinterpretation within Biology: Phenotypes, Statistics, Networks, and Inference