Frontiers in Plant Science | Plant Bioinformatics

Original Research

Published on 21 Mar 2024

Comparative genomics, pangenomics, and phenomic studies of Pectobacterium betavasculorum strains isolated from sugar beet, potato, sunflower, and artichoke: insights into pathogenicity, virulence determinants, and adaptation to the host plant

in Plant Bioinformatics

Maria Borowska-Beszta
Magdalena Smoktunowicz
Daria Horoszkiewicz
Joanna Jonca
Michal Mateusz Waleron
Jan Gawor
Adriana Mika
Tomasz Sledzinski
Krzysztof Waleron
Malgorzata Waleron

Frontiers in Plant Science

doi 10.3389/fpls.2024.1352318

4,527 views
1 citation

Methods

Published on 20 Mar 2024

A new model construction based on the knowledge graph for mining elite polyphenotype genes in crops

in Plant Bioinformatics

Dandan Zhang
Ruixue Zhao
Guojian Xian
Yuantao Kou
Weilu Ma

Frontiers in Plant Science

doi 10.3389/fpls.2024.1361716

1,973 views

Original Research

Published on 19 Mar 2024

A comprehensive evaluation of the potential of three next-generation short-read-based plant pan-genome construction strategies for the identification of novel non-reference sequence

in Plant Bioinformatics

Meiye Jiang
Meili Chen
Jingyao Zeng
Zhenglin Du
Jingfa Xiao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1371222

1,753 views
1 citation

Methods

Published on 19 Mar 2024

Identification of plant microRNAs using convolutional neural network

in Plant Bioinformatics

Yun Zhang
Jianghua Huang
Feixiang Xie
Qian Huang
Hongguan Jiao
Wenbo Cheng

Frontiers in Plant Science

doi 10.3389/fpls.2024.1330854

1,604 views

Original Research

Published on 18 Mar 2024

Combined miRNA and mRNA sequencing reveals the defensive strategies of resistant YHY15 rice against differentially virulent brown planthoppers

in Plant Bioinformatics

Bin Yu
Mengjia Geng
Yu Xue
Qingqing Yu
Bojie Lu
Miao Liu
Yuhan Shao
Chenxi Li
Jingang Xu
Jintao Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1366515

1,873 views
4 citations

Methods

Published on 14 Mar 2024

LocoGSE, a sequence-based genome size estimator for plants

in Plant Bioinformatics

Pierre Guenzi-Tiberi
Benjamin Istace
Inger Greve Alsos
The PhyloNorway Consortium
Eric Coissac
Sébastien Lavergne
The PhyloAlps Consortium
Jean-Marc Aury
France Denoeud
L.G. Alsos

Frontiers in Plant Science

doi 10.3389/fpls.2024.1328966

2,789 views
2 citations

Original Research

Published on 11 Mar 2024

Transcriptome and co-expression network revealed molecular mechanism underlying selenium response of foxtail millet (Setaria italica)

in Plant Bioinformatics

Yinyuan Wen
Liuna Cheng
Zeya Zhao
Mengyao An
Shixue Zhou
Juan Zhao
Shuqi Dong
Xiangyang Yuan
Meiqiang Yin

Frontiers in Plant Science

doi 10.3389/fpls.2024.1355518

2,994 views
6 citations

Original Research

Published on 08 Mar 2024

Ambient temperature regulates root circumnutation in rice through the ethylene pathway: transcriptome analysis reveals key genes involved

in Plant Bioinformatics

Zeping Cai
Yinuo Dai
Xia Jin
Hui Xu
Zhen Huang
Zhenyu Xie
Xudong Yu
Jiajia Luo

Frontiers in Plant Science

doi 10.3389/fpls.2024.1348295

1,722 views
1 citation

Original Research

Published on 08 Mar 2024

Aphid gene expression following polerovirus acquisition is host species dependent

in Plant Bioinformatics

Sudeep Pandey
Michael Catto
Phillip Roberts
Sudeep Bag
Alana L. Jacobson
Rajagopalbabu Srinivasan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1341781

2,497 views
1 citation

Original Research

Published on 08 Mar 2024

A chromosome-level genome assembly of Solanum chilense, a tomato wild relative associated with resistance to salinity and drought

in Plant Bioinformatics

Corentin Molitor
Tomasz J. Kurowski
Pedro M. Fidalgo de Almeida
Zoltan Kevei
Daniel J. Spindlow
Steffimol R. Chacko Kaitholil
Justice U. Iheanyichi
H. C. Prasanna
Andrew J. Thompson
Fady R. Mohareb

Frontiers in Plant Science

doi 10.3389/fpls.2024.1342739

4,729 views
1 citation

Original Research

Published on 07 Mar 2024

Full-length transcriptome sequencing provides insights into alternative splicing under cold stress in peanut

in Plant Bioinformatics

Xin Wang
Yue Liu
Lei Ouyang
Ruonan Yao
Tingting Yu
Liying Yan
Yuning Chen
Dongxin Huai
Xiaojing Zhou
Zhihui Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1362277

2,659 views
3 citations

Original Research

Published on 06 Mar 2024

High-throughput UAV-based rice panicle detection and genetic mapping of heading-date-related traits

in Plant Bioinformatics

Rulei Chen
Hengyun Lu
Yongchun Wang
Qilin Tian
Congcong Zhou
Ahong Wang
Qi Feng
Songfu Gong
Qiang Zhao
Bin Han

Frontiers in Plant Science

doi 10.3389/fpls.2024.1327507

2,705 views
1 citation

Original Research

Published on 05 Mar 2024

Identification of molecular markers and candidate regions associated with grain number per spike in Pubing3228 using SLAF-BSA

in Plant Bioinformatics

Jiansheng Wang
Erwei Wang
Shiping Cheng
Aichu Ma

Frontiers in Plant Science

doi 10.3389/fpls.2024.1361621

1,388 views
2 citations

Original Research

Published on 05 Mar 2024

Plant necrotrophic bacterial disease resistance phenotypes, QTL, and metabolites identified through integrated genetic mapping and metabolomics in Solanum species

in Plant Bioinformatics

Janak R. Joshi
Dev Paudel
Ethan Eddy
Amy O. Charkowski
Adam L. Heuberger

Frontiers in Plant Science

doi 10.3389/fpls.2024.1336513

1,967 views
1 citation

Original Research

Published on 05 Mar 2024

A de novo chromosome-scale assembly of the Lablab purpureus genome

in Plant Bioinformatics

Wirulda Pootakham
Prakit Somta
Wasitthee Kongkachana
Chaiwat Naktang
Chutima Sonthirod
Sonicha U-Thoomporn
Thippawan Yoocha
Poompat Phadphon
Sithichoke Tangphatsornruang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1347744

2,234 views

Editorial

Published on 27 Feb 2024

Editorial: Advances on genomics and genetics of horticultural crops and their contribution to breeding efforts - volume II

in Plant Bioinformatics

Eleni Tani
Aliki Xanthopoulou
Christos Bazakos

Frontiers in Plant Science

doi 10.3389/fpls.2024.1385217

1,095 views