Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 09 Sep 2024

Explainable artificial intelligence for genotype-to-phenotype prediction in plant breeding: a case study with a dataset from an almond germplasm collection

in Functional and Applied Plant Genomics

Pierfrancesco Novielli
Donato Romano
Stefano Pavan
Pasquale Losciale
Anna Maria Stellacci
Domenico Diacono
Roberto Bellotti
Sabina Tangaro

Frontiers in Plant Science

doi 10.3389/fpls.2024.1434229

2,797 views
3 citations

Original Research

Published on 09 Sep 2024

Genomic prediction of yield-related traits and genome-based establishment of heterotic pattern in maize hybrid breeding of Southwest China

in Functional and Applied Plant Genomics

Yong Xiang
Chao Xia
Lujiang Li
Rujun Wei
Tingzhao Rong
Hailan Liu
Hai Lan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1441555

2,778 views
2 citations

Original Research

Published on 05 Sep 2024

Genome assembly of Stephania longa provides insight into cepharanthine biosynthesis

in Functional and Applied Plant Genomics

Huiying Shang
Yuan Lu
Lulu Xun
Kun Wang
Bin Li
Yuxuan Liu
Tao Ma

Frontiers in Plant Science

doi 10.3389/fpls.2024.1414636

1,154 views
1 citation

Original Research

Published on 03 Sep 2024

Mitochondrial genome study of Camellia oleifera revealed the tandem conserved gene cluster of nad5–nads in evolution

in Functional and Applied Plant Genomics

Yiyang Gu
Liying Yang
Junqin Zhou
Zhun Xiao
Mengqi Lu
Yanling Zeng
Xiaofeng Tan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1396635

1,107 views

Original Research

Published on 03 Sep 2024

Genetic mapping and molecular marker development for white flesh color in tomato

in Functional and Applied Plant Genomics

Jie Liu
Xiaoxue Fang
Fangjie Yu
Chengfeng Zhang
Pengfei Fan
Ningdong Wang
Qiao Shao
Ning Gan
Xiaolong Lv
Bo Ouyang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1459013

1,741 views

Original Research

Published on 03 Sep 2024

Genome-wide analysis of the WOX gene family and function exploration of RhWOX331 in rose (R. ‘The Fairy’)

in Functional and Applied Plant Genomics

Lian Duan
Zhihui Hou
Wuhua Zhang
Shuang Liang
Minge Huangfu
Jinzhu Zhang
Tao Yang
Jie Dong
Daidi Che

Frontiers in Plant Science

doi 10.3389/fpls.2024.1461322

1,387 views
2 citations

Original Research

Published on 30 Aug 2024

Brchli1 mutation induces bright yellow leaves by disrupting magnesium chelatase I subunit function in Chinese cabbage (Brassica rapa L. ssp. pekinensis)

in Functional and Applied Plant Genomics

Chuanhong Liu
Yi Chai
Chong Tan
Fengyan Shi
Yun Zhang
Zhiyong Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1450242

1,055 views

Original Research

Published on 29 Aug 2024

Illumina-based transcriptomic analysis of the fast-growing leguminous tree Acacia crassicarpa: functional gene annotation and identification of novel SSR-markers

in Functional and Applied Plant Genomics

Shougo Ishio
Kazutaka Kusunoki
Michiko Nemoto
Tadayoshi Kanao
Takashi Tamura

Frontiers in Plant Science

doi 10.3389/fpls.2024.1339958

1,111 views
1 citation

Original Research

Published on 26 Aug 2024

Genomic analyses of agronomic traits in tea plants and related Camellia species

in Functional and Applied Plant Genomics

Shengchang Duan
Liang Yan
Zongfang Shen
Xuzhen Li
Baozheng Chen
Dawei Li
Hantao Qin
Muditha K. Meegahakumbura
Moses C. Wambulwa
Lianming Gao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1449006

2,054 views
1 citation

Review

Published on 21 Aug 2024

Research progress and application strategies of sugar transport mechanisms in rice

in Functional and Applied Plant Genomics

Jun Li
Changcai He
Shihang Liu
Yuting Guo
Yuxiu Zhang
Lanjing Zhang
Xu Zhou
Dongyu Xu
Xu Luo
Hongying Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1454615

3,021 views
2 citations

Original Research

Published on 20 Aug 2024

Genetic dissection of value-added quality traits and agronomic parameters through genome-wide association mapping in bread wheat (T. aestivum L.)

in Functional and Applied Plant Genomics

Manish K. Vishwakarma
Pradeep K. Bhati
Uttam Kumar
Ravi P. Singh
Sundeep Kumar
Velu Govindan
Gurvinder Singh Mavi
Karthikeyan Thiyagarajan
Narain Dhar
Arun K. Joshi

Frontiers in Plant Science

doi 10.3389/fpls.2024.1419227

1,800 views

Review

Published on 19 Aug 2024

The pleiotropic functions of GOLDEN2-LIKE transcription factors in plants

in Functional and Applied Plant Genomics

Mengyi Zheng
Xinyu Wang
Jie Luo
Bojun Ma
Dayong Li
Xifeng Chen

Frontiers in Plant Science

doi 10.3389/fpls.2024.1445875

2,807 views
3 citations

Original Research

Published on 19 Aug 2024

Genome-wide analysis of the soybean eEF gene family and its involvement in virus resistance

in Functional and Applied Plant Genomics

Hexiang Luan
Daiqiao Song
Kai Huang
Shuxin Li
Hao Xu
Pradeep Kachroo
Aardra Kachroo
Longgang Zhao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1421221

1,191 views

Original Research

Published on 19 Aug 2024

Chromosome-level genome assemblies for two quinoa inbred lines from northern and southern highlands of Altiplano where quinoa originated

in Functional and Applied Plant Genomics

Yasufumi Kobayashi
Hideki Hirakawa
Kenta Shirasawa
Kazusa Nishimura
Kenichiro Fujii
Rolando Oros
Giovanna R. Almanza
Yukari Nagatoshi
Yasuo Yasui
Yasunari Fujita

Frontiers in Plant Science

doi 10.3389/fpls.2024.1434388

3,186 views
2 citations

Original Research

Published on 14 Aug 2024

Overexpression of the ribosome-inactivating protein OsRIP1 modulates the jasmonate signaling pathway in rice

in Functional and Applied Plant Genomics

Simin Chen
Noémie De Zutter
Anikó Meijer
Koen Gistelinck
Pieter Wytynck
Isabel Verbeke
Vinicius J. S. Osterne
Subramanyam Kondeti
Tim De Meyer
Kris Audenaert

Frontiers in Plant Science

doi 10.3389/fpls.2024.1385477

1,398 views
1 citation

Original Research

Published on 14 Aug 2024

Triple gene mutations boost amylose and resistant starch content in rice: insights from sbe2b/sbe1/OE-Wxa mutants

in Functional and Applied Plant Genomics

Xiaoqiong Chen
Qiaoling Guo
Xiaoli Yang
Meng Yuan
Jianguo Song
Hongyan Fu
Hongyu Zhang
Peizhou Xu
Yongxiang Liao
Asif Ali

Frontiers in Plant Science

doi 10.3389/fpls.2024.1452520

1,525 views
1 citation