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ORIGINAL RESEARCH article

Front. Mol. Biosci.
Sec. Molecular Diagnostics and Therapeutics
Volume 11 - 2024 | doi: 10.3389/fmolb.2024.1478611
This article is part of the Research Topic Exploring Molecular Recognition: Integrating Experimental and Computational Approaches View all articles

Novel cuproptosis metabolism-related molecular clusters and diagnostic signature for Alzheimer's disease

Provisionally accepted
Fang Jia Fang Jia 1Wanhong Han Wanhong Han 2*Shuang-Qi Gao Shuang-Qi Gao 1Jianwei Huang Jianwei Huang 1*Wujie Zhao Wujie Zhao 2*Zhenwei Lu Zhenwei Lu 2Wenpeng Zhao Wenpeng Zhao 2Zhangyu Li Zhangyu Li 2*Zhanxiang Wang Zhanxiang Wang 2*Ying Guo Ying Guo 1*
  • 1 Department of Neurosurgery, Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
  • 2 Department of Neurosurgery, Xiamen Key Laboratory of Brain Center, The First Affiliated Hospital of Xiamen University, Xiamen, China

The final, formatted version of the article will be published soon.

    Background: Alzheimer's disease (AD) is a progressive neurodegenerative disorder with no effective treatments available. There is growing evidence that cuproptosis contributes to the pathogenesis of this disease. This study developed a novel molecular clustering based on cuproptosis-related genes and constructed a signature for AD patients.The differentially expressed cuproptosis-related genes (DECRGs) were identified using the DESeq2 R package. The GSEA, PPI network, GO, KEGG, and correlation analysis were conducted to explore the biological functions of DECRGs. Molecular clusters were performed using unsupervised cluster analysis. Differences in biological processes between clusters were evaluated by GSVA and immune infiltration analysis. The optimal model was constructed by WGCNA and machine learning techniques. Decision curve analysis, calibration curves, receiver operating characteristic (ROC) curves, and two additional datasets were employed to confirm the prediction results. Finally, immunofluorescence (IF) staining in AD mice models was used to verify the expression levels of risk genes.Results: GSEA and CIBERSORT showed higher levels of resting NK cells, M2 macrophages, naï ve CD4 + T cells, neutrophils, monocytes, and plasma cells in AD samples compared to controls. We classified 310 AD patients into two molecular clusters with distinct expression profiles and different immunological characteristics. The C1 subtype showed higher abundance of cuproptosis-related genes, with higher proportions of regulatory T cells, CD8 + T cells, and resting dendritic cells. We subsequently constructed a diagnostic model which was confirmed by nomogram, calibration, and decision curve analysis. The values of area under the curves (AUC) were 0.738 and 0.931 for the external datasets, respectively. The expression levels of risk genes were further validated in mouse brain samples.Our study provided potential targets for AD treatment, developed a promising gene signature, and offered novel insights for exploring the pathogenesis of AD.

    Keywords: Alzheimer's disease, cuproptosis, Molecular cluster, Immune infiltration, Gene signature

    Received: 10 Aug 2024; Accepted: 15 Oct 2024.

    Copyright: © 2024 Jia, Han, Gao, Huang, Zhao, Lu, Zhao, Li, Wang and Guo. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence:
    Wanhong Han, Department of Neurosurgery, Xiamen Key Laboratory of Brain Center, The First Affiliated Hospital of Xiamen University, Xiamen, China
    Jianwei Huang, Department of Neurosurgery, Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
    Wujie Zhao, Department of Neurosurgery, Xiamen Key Laboratory of Brain Center, The First Affiliated Hospital of Xiamen University, Xiamen, China
    Zhangyu Li, Department of Neurosurgery, Xiamen Key Laboratory of Brain Center, The First Affiliated Hospital of Xiamen University, Xiamen, China
    Zhanxiang Wang, Department of Neurosurgery, Xiamen Key Laboratory of Brain Center, The First Affiliated Hospital of Xiamen University, Xiamen, China
    Ying Guo, Department of Neurosurgery, Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, China

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