Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 29 Jan 2021

Fermented Soybean Meal Replacement in the Diet of Lactating Holstein Dairy Cows: Modulated Rumen Fermentation and Ruminal Microflora

in Systems Microbiology

Zuo Wang
Yuannian Yu
Xinyao Li
Hongyan Xiao
Peihua Zhang
Weijun Shen
Fachun Wan
Jianhua He
Shaoxun Tang
Zhiliang Tan

Frontiers in Microbiology

doi 10.3389/fmicb.2021.625857

6,009 views
21 citations

Mini Review

Published on 28 Jan 2021

We Are One: Multispecies Metabolism of a Biofilm Consortium and Their Treatment Strategies

in Systems Microbiology

Ruchika Vinod Joshi
Cindy Gunawan
Riti Mann

Frontiers in Microbiology

doi 10.3389/fmicb.2021.635432

11,567 views
45 citations

Perspective

Published on 22 Jan 2021

Combating Antimicrobial Resistance Through Student-Driven Research and Environmental Surveillance

in Systems Microbiology

Erica R. Fuhrmeister
Jennifer R. Larson
Adam J. Kleinschmit
James E. Kirby
Amy J. Pickering
Carol A. Bascom-Slack

Frontiers in Microbiology

doi 10.3389/fmicb.2021.577821

6,791 views
8 citations

Original Research

Published on 21 Jan 2021

Unravelling the Role of Rumen Microbial Communities, Genes, and Activities on Milk Fatty Acid Profile Using a Combination of Omics Approaches

in Systems Microbiology

Sokratis Stergiadis
Irene Cabeza-Luna
Marina Mora-Ortiz
Robert D. Stewart
Richard J. Dewhurst
David J. Humphries
Mick Watson
Rainer Roehe
Marc D. Auffret

Frontiers in Microbiology

doi 10.3389/fmicb.2020.590441

7,593 views
17 citations

Original Research

Published on 21 Jan 2021

A Longitudinal Study of the Human Oropharynx Microbiota Over Time Reveals a Common Core and Significant Variations With Self-Reported Disease

in Systems Microbiology

Lydia Luise Bach
Asha Ram
Umer Z. Ijaz
Thomas J. Evans
Jan Lindström

Frontiers in Microbiology

doi 10.3389/fmicb.2020.573969

3,796 views
19 citations

Original Research

Published on 21 Jan 2021

DeepT3_4: A Hybrid Deep Neural Network Model for the Distinction Between Bacterial Type III and IV Secreted Effectors

in Systems Microbiology

Lezheng Yu
Fengjuan Liu
Yizhou Li
Jiesi Luo
Runyu Jing

Frontiers in Microbiology

doi 10.3389/fmicb.2021.605782

3,727 views
11 citations

Technology and Code

Published on 21 Jan 2021

BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts

in Systems Microbiology

Beibei Wang
Huayi Yang
Jianan Sun
Chuhao Dou
Jian Huang
Feng-Biao Guo

Frontiers in Microbiology

doi 10.3389/fmicb.2021.593979

4,519 views
7 citations

Review

Published on 20 Jan 2021

The Less Expensive Choice: Bacterial Strategies to Achieve Successful and Sustainable Reciprocal Interactions

in Systems Microbiology

Enrica Pessione

Frontiers in Microbiology

doi 10.3389/fmicb.2020.571417

4,398 views
10 citations

Original Research

Published on 20 Jan 2021

Students’ Experiences of Working With a Socio-Scientific Issues-Based Curriculum Unit Using Role-Playing to Negotiate Antibiotic Resistance

in Systems Microbiology

Konstantin J. Sagmeister
Christoph W. Schinagl
Suzanne Kapelari
Pamela Vrabl

Frontiers in Microbiology

doi 10.3389/fmicb.2020.577501

6,868 views
12 citations

Original Research

Published on 14 Jan 2021

Integrative Analysis of Whole Genome Sequencing and Phenotypic Resistance Toward Prediction of Trimethoprim-Sulfamethoxazole Resistance in Staphylococcus aureus

in Systems Microbiology

Dennis Nurjadi
Elfi Zizmann
Quan Chanthalangsy
Klaus Heeg
Sébastien Boutin

Frontiers in Microbiology

doi 10.3389/fmicb.2020.607842

4,067 views
22 citations

Original Research

Published on 14 Jan 2021

Organic Acids as Alternatives for Antibiotic Growth Promoters Alter the Intestinal Structure and Microbiota and Improve the Growth Performance in Broilers

in Systems Microbiology

Dong Dai
Kai Qiu
Hai-jun Zhang
Shu-geng Wu
Yan-ming Han
Yuan-yuan Wu
Guang-hai Qi
Jing Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2020.618144

9,619 views
56 citations

Original Research

Published on 14 Jan 2021

The Therapeutic Efficacy of Curcumin vs. Metformin in Modulating the Gut Microbiota in NAFLD Rats: A Comparative Study

in Systems Microbiology

Ruifang Li
Yurong Yao
Pengfei Gao
Shurui Bu

Frontiers in Microbiology

doi 10.3389/fmicb.2020.555293

9,621 views
43 citations

Review

Published on 14 Jan 2021

Probiotics and MicroRNA: Their Roles in the Host–Microbe Interactions

in Systems Microbiology

Ying Zhao
Yan Zeng
Dong Zeng
Hesong Wang
Mengjia Zhou
Ning Sun
Jinge Xin
Abdul Khalique
Danish Sharafat Rajput
Kangcheng Pan

Frontiers in Microbiology

doi 10.3389/fmicb.2020.604462

10,673 views
40 citations

Original Research

Published on 13 Jan 2021

A Culturally Responsive Curricular Revision to Improve Engagement and Learning in an Undergraduate Microbiology Lab Course

in Systems Microbiology

Karla S. Fuller
Camila Torres Rivera

Frontiers in Microbiology

doi 10.3389/fmicb.2020.577852

4,418 views
8 citations

Original Research

Published on 13 Jan 2021

Comparative Decomposition of Humans and Pigs: Soil Biogeochemistry, Microbial Activity and Metabolomic Profiles

in Systems Microbiology

Jennifer M. DeBruyn
Katharina M. Hoeland
Lois S. Taylor
Jessica D. Stevens
Michelle A. Moats
Sreejata Bandopadhyay
Stephen P. Dearth
Hector F. Castro
Kaitlin K. Hewitt
Shawn R. Campagna

Frontiers in Microbiology

doi 10.3389/fmicb.2020.608856

13,082 views
25 citations

Original Research

Published on 12 Jan 2021

Effects of Rare Microbiome Taxa Filtering on Statistical Analysis

in Systems Microbiology

Quy Cao
Xinxin Sun
Karun Rajesh
Naga Chalasani
Kayla Gelow
Barry Katz
Vijay H. Shah
Arun J. Sanyal
Ekaterina Smirnova

Frontiers in Microbiology

doi 10.3389/fmicb.2020.607325

21,340 views
104 citations

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Articles

Fermented Soybean Meal Replacement in the Diet of Lactating Holstein Dairy Cows: Modulated Rumen Fermentation and Ruminal Microflora

We Are One: Multispecies Metabolism of a Biofilm Consortium and Their Treatment Strategies

Combating Antimicrobial Resistance Through Student-Driven Research and Environmental Surveillance

Unravelling the Role of Rumen Microbial Communities, Genes, and Activities on Milk Fatty Acid Profile Using a Combination of Omics Approaches

A Longitudinal Study of the Human Oropharynx Microbiota Over Time Reveals a Common Core and Significant Variations With Self-Reported Disease

DeepT3_4: A Hybrid Deep Neural Network Model for the Distinction Between Bacterial Type III and IV Secreted Effectors

BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts

The Less Expensive Choice: Bacterial Strategies to Achieve Successful and Sustainable Reciprocal Interactions

Students’ Experiences of Working With a Socio-Scientific Issues-Based Curriculum Unit Using Role-Playing to Negotiate Antibiotic Resistance

Integrative Analysis of Whole Genome Sequencing and Phenotypic Resistance Toward Prediction of Trimethoprim-Sulfamethoxazole Resistance in Staphylococcus aureus

Organic Acids as Alternatives for Antibiotic Growth Promoters Alter the Intestinal Structure and Microbiota and Improve the Growth Performance in Broilers

The Therapeutic Efficacy of Curcumin vs. Metformin in Modulating the Gut Microbiota in NAFLD Rats: A Comparative Study

Probiotics and MicroRNA: Their Roles in the Host–Microbe Interactions

A Culturally Responsive Curricular Revision to Improve Engagement and Learning in an Undergraduate Microbiology Lab Course

Comparative Decomposition of Humans and Pigs: Soil Biogeochemistry, Microbial Activity and Metabolomic Profiles

Effects of Rare Microbiome Taxa Filtering on Statistical Analysis