Frontiers in Microbiology | Systems Microbiology

Methods

Published on 08 Mar 2021

Leveraging Curation Among Escherichia coli Pathway/Genome Databases Using Ortholog-Based Annotation Propagation

in Systems Microbiology

Suzanne Paley
Ingrid M. Keseler
Markus Krummenacker
Peter D. Karp

Frontiers in Microbiology

doi 10.3389/fmicb.2021.614355

2,904 views
3 citations

Perspective

Published on 04 Mar 2021

Blogging as a Tool for Real-Time Learning in Medical Microbiology

in Systems Microbiology

Charmaine Lloyd

Frontiers in Microbiology

doi 10.3389/fmicb.2021.576145

3,143 views
2 citations

Original Research

Published on 04 Mar 2021

The Rumen Bacterial Community in Dairy Cows Is Correlated to Production Traits During Freshening Period

in Systems Microbiology

Shuai Huang
Shoukun Ji
Garret Suen
Feiran Wang
Shengli Li

Frontiers in Microbiology

doi 10.3389/fmicb.2021.630605

5,791 views
25 citations

Original Research

Published on 01 Mar 2021

Impact of Oseltamivir Treatment on Influenza A and B Virus Dynamics in Human Volunteers

in Systems Microbiology

Kyla L. Hooker
Vitaly V. Ganusov

Frontiers in Microbiology

doi 10.3389/fmicb.2021.631211

10,400 views
7 citations

Original Research

Published on 25 Feb 2021

Effects of Xylo-Oligosaccharides on Growth and Gut Microbiota as Potential Replacements for Antibiotic in Weaning Piglets

in Systems Microbiology

Yuxia Chen
Yining Xie
Ruqing Zhong
Lei Liu
Changguang Lin
Lin Xiao
Liang Chen
Hongfu Zhang
Yves Beckers
Nadia Everaert

Frontiers in Microbiology

doi 10.3389/fmicb.2021.641172

6,294 views
52 citations

Original Research

Published on 25 Feb 2021

Chemotranscriptomic Profiling Defines Drug-Specific Signatures of the Glycopeptide Antibiotics Dalbavancin, Vancomycin and Chlorobiphenyl-Vancomycin in a VanB-Type-Resistant Streptomycete

in Systems Microbiology

Andy Hesketh
Giselda Bucca
Colin P. Smith
Hee-Jeon Hong

Frontiers in Microbiology

doi 10.3389/fmicb.2021.641756

3,583 views
1 citation

Original Research

Published on 25 Feb 2021

Reverse Microbiomics: A New Reverse Dysbiosis Analysis Strategy and Its Usage in Prediction of Autoantigens and Virulent Factors in Dysbiotic Gut Microbiomes From Rheumatoid Arthritis Patients

in Systems Microbiology

Haihe Wang
Edison Ong
John Y. Kao
Duxin Sun
Yongqun He

Frontiers in Microbiology

doi 10.3389/fmicb.2021.633732

7,013 views
10 citations

Original Research

Published on 22 Feb 2021

Supplemental Xylooligosaccharide Modulates Intestinal Mucosal Barrier and Cecal Microbiota in Laying Hens Fed Oxidized Fish Oil

in Systems Microbiology

Jian-min Zhou
Hai-jun Zhang
Shu-geng Wu
Kai Qiu
Yu Fu
Guang-hai Qi
Jing Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2021.635333

5,041 views
21 citations

Review

Published on 19 Feb 2021

Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment

in Systems Microbiology

Laura Judith Marcos-Zambrano
Kanita Karaduzovic-Hadziabdic
Tatjana Loncar Turukalo
Piotr Przymus
Vladimir Trajkovik
Oliver Aasmets
Magali Berland
Aleksandra Gruca
Jasminka Hasic
Karel Hron

Frontiers in Microbiology

doi 10.3389/fmicb.2021.634511

71,368 views
205 citations

Original Research

Published on 18 Feb 2021

A Molecular Interaction Map of Klebsiella pneumoniae and Its Human Host Reveals Potential Mechanisms of Host Cell Subversion

in Systems Microbiology

Deeya Saha
Sudip Kundu

Frontiers in Microbiology

doi 10.3389/fmicb.2021.613067

6,957 views
9 citations

Original Research

Published on 17 Feb 2021

Integrated Microbiome and Metabolome Analysis Reveals a Positive Change in the Intestinal Environment of Myostatin Edited Large White Pigs

in Systems Microbiology

Yangli Pei
Chujie Chen
Yulian Mu
Yalan Yang
Zheng Feng
Bugao Li
Hua Li
Kui Li

Frontiers in Microbiology

doi 10.3389/fmicb.2021.628685

5,271 views
19 citations

Original Research

Published on 17 Feb 2021

Enhanced Ohmyungsamycin A Production via Adenylation Domain Engineering and Optimization of Culture Conditions

in Systems Microbiology

Eunji Kim
Young Eun Du
Yeon Hee Ban
Yern-Hyerk Shin
Dong-Chan Oh
Yeo Joon Yoon

Frontiers in Microbiology

doi 10.3389/fmicb.2021.626881

2,501 views
13 citations

Original Research

Published on 10 Feb 2021

Impact of Temporal pH Fluctuations on the Coexistence of Nasal Bacteria in an in silico Community

in Systems Microbiology

Sandra Dedrick
M. Javad Akbari
Samantha K. Dyckman
Nannan Zhao
Yang-Yu Liu
Babak Momeni

Frontiers in Microbiology

doi 10.3389/fmicb.2021.613109

2,920 views
8 citations

Original Research

Published on 05 Feb 2021

Metagenomics Reveals That Intravenous Injection of Beta-Hydroxybutyric Acid (BHBA) Disturbs the Nasopharynx Microflora and Increases the Risk of Respiratory Diseases

in Systems Microbiology

Jiancheng Qi
Dongjie Cai
Yaocheng Cui
Tianyu Tan
Huawei Zou
Wei Guo
Yue Xie
Hongrui Guo
Shi-Yi Chen
Xiaoping Ma

Frontiers in Microbiology

doi 10.3389/fmicb.2020.630280

3,794 views
7 citations

Original Research

Published on 04 Feb 2021

Introduction of Colonic and Fecal Microbiota From an Adult Pig Differently Affects the Growth, Gut Health, Intestinal Microbiota and Blood Metabolome of Newborn Piglets

in Systems Microbiology

Renli Qi
Zhuo Zhang
Jing Wang
Xiaoyu Qiu
Qi Wang
Feiyun Yang
Jinxiu Huang
Zuohua Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2021.623673

7,039 views
24 citations

Review

Published on 04 Feb 2021

Eradication of Helicobacter pylori and Gastric Cancer: A Controversial Relationship

in Systems Microbiology

Mariagrazia Piscione
Mariangela Mazzone
Maria Carmela Di Marcantonio
Raffaella Muraro
Gabriella Mincione

Frontiers in Microbiology

doi 10.3389/fmicb.2021.630852

29,125 views
67 citations

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Articles

Leveraging Curation Among Escherichia coli Pathway/Genome Databases Using Ortholog-Based Annotation Propagation

Blogging as a Tool for Real-Time Learning in Medical Microbiology

The Rumen Bacterial Community in Dairy Cows Is Correlated to Production Traits During Freshening Period

Impact of Oseltamivir Treatment on Influenza A and B Virus Dynamics in Human Volunteers

Effects of Xylo-Oligosaccharides on Growth and Gut Microbiota as Potential Replacements for Antibiotic in Weaning Piglets

Chemotranscriptomic Profiling Defines Drug-Specific Signatures of the Glycopeptide Antibiotics Dalbavancin, Vancomycin and Chlorobiphenyl-Vancomycin in a VanB-Type-Resistant Streptomycete

Reverse Microbiomics: A New Reverse Dysbiosis Analysis Strategy and Its Usage in Prediction of Autoantigens and Virulent Factors in Dysbiotic Gut Microbiomes From Rheumatoid Arthritis Patients

Supplemental Xylooligosaccharide Modulates Intestinal Mucosal Barrier and Cecal Microbiota in Laying Hens Fed Oxidized Fish Oil

Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment

A Molecular Interaction Map of Klebsiella pneumoniae and Its Human Host Reveals Potential Mechanisms of Host Cell Subversion

Integrated Microbiome and Metabolome Analysis Reveals a Positive Change in the Intestinal Environment of Myostatin Edited Large White Pigs

Enhanced Ohmyungsamycin A Production via Adenylation Domain Engineering and Optimization of Culture Conditions

Impact of Temporal pH Fluctuations on the Coexistence of Nasal Bacteria in an in silico Community

Metagenomics Reveals That Intravenous Injection of Beta-Hydroxybutyric Acid (BHBA) Disturbs the Nasopharynx Microflora and Increases the Risk of Respiratory Diseases

Introduction of Colonic and Fecal Microbiota From an Adult Pig Differently Affects the Growth, Gut Health, Intestinal Microbiota and Blood Metabolome of Newborn Piglets

Eradication of Helicobacter pylori and Gastric Cancer: A Controversial Relationship