Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 21 May 2021

Reads Binning Improves the Assembly of Viral Genome Sequences From Metagenomic Samples

in Systems Microbiology

Kai Song

Frontiers in Microbiology

doi 10.3389/fmicb.2021.664560

4,635 views
3 citations

Original Research

Published on 19 May 2021

Implications of the Thermodynamic Response of Soil Mineralization, Respiration, and Nitrification on Soil Organic Matter Retention

in Systems Microbiology

Anne E. Taylor
Camille Ottoman
Frank Chaplen

Frontiers in Microbiology

doi 10.3389/fmicb.2021.651210

2,993 views
6 citations

Perspective

Published on 19 May 2021

Implementation of a Service-Learning Project Focused on Handwashing and Vaccinations Within an Undergraduate Microbiology Laboratory Course

in Systems Microbiology

Beth A. Potter

Frontiers in Microbiology

doi 10.3389/fmicb.2021.587094

1,621 views

Original Research

Published on 18 May 2021

Probiotics Bacillus licheniformis Improves Intestinal Health of Subclinical Necrotic Enteritis-Challenged Broilers

in Systems Microbiology

Liugang Kan
Fangshen Guo
Yan Liu
Van Hieu Pham
Yuming Guo
Zhong Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2021.623739

11,292 views
41 citations

Original Research

Published on 12 May 2021

Alterations of Serum Metabolites and Fecal Microbiota Involved in Ewe Follicular Cyst

in Systems Microbiology

Tao Feng
Hongxiang Ding
Jing Wang
Wei Xu
Yan Liu
Ákos Kenéz

Frontiers in Microbiology

doi 10.3389/fmicb.2021.675480

3,592 views
5 citations

Review

Published on 11 May 2021

Computational Biology and Machine Learning Approaches to Understand Mechanistic Microbiome-Host Interactions

in Systems Microbiology

Padhmanand Sudhakar
Kathleen Machiels
Bram Verstockt
Tamas Korcsmaros
Séverine Vermeire

Frontiers in Microbiology

doi 10.3389/fmicb.2021.618856

12,469 views
33 citations

Methods

Published on 05 May 2021

HCK and ABAA: A Newly Designed Pipeline to Improve Fungi Metabarcoding Analysis

in Systems Microbiology

Kodjovi D. Mlaga
Alban Mathieu
Charles Joly Beauparlant
Alban Ott
Ahmad Khodr
Olivier Perin
Arnaud Droit

Frontiers in Microbiology

doi 10.3389/fmicb.2021.640693

3,871 views

Review

Published on 03 May 2021

Towards a Systems Biology Approach to Understanding the Lichen Symbiosis: Opportunities and Challenges of Implementing Network Modelling

in Systems Microbiology

Hadi Nazem-Bokaee
Erik F. Y. Hom
Andrew C. Warden
Sarah Mathews
Cécile Gueidan

Frontiers in Microbiology

doi 10.3389/fmicb.2021.667864

10,899 views
22 citations

Original Research

Published on 30 Apr 2021

The Composition of the Microbiota in the Full-Term Fetal Gut and Amniotic Fluid: A Bovine Cesarean Section Study

in Systems Microbiology

Aleksi Husso
Leen Lietaer
Tiina Pessa-Morikawa
Thomas Grönthal
Jan Govaere
Ann Van Soom
Antti Iivanainen
Geert Opsomer
Mikael Niku

Frontiers in Microbiology

doi 10.3389/fmicb.2021.626421

5,492 views
31 citations

Original Research

Published on 29 Apr 2021

Correlation of Breed, Growth Performance, and Rumen Microbiota in Two Rustic Cattle Breeds Reared Under Different Conditions

in Systems Microbiology

Matteo Daghio
Francesca Ciucci
Arianna Buccioni
Alice Cappucci
Laura Casarosa
Andrea Serra
Giuseppe Conte
Carlo Viti
Breanne M. McAmmond
Jonathan D. Van Hamme

Frontiers in Microbiology

doi 10.3389/fmicb.2021.652031

5,076 views
33 citations

Original Research

Published on 28 Apr 2021

Repulsive Guidance Molecule b Deficiency Induces Gut Microbiota Dysbiosis and Increases the Susceptibility to Intestinal Inflammation in Mice

in Systems Microbiology

Ying Shi
Lu Zhong
Yuting Li
Yanfang Chen
Shufen Feng
Min Wang
Yin Xia
Shaohui Tang

Frontiers in Microbiology

doi 10.3389/fmicb.2021.648915

4,887 views
14 citations

Original Research

Published on 22 Apr 2021

Genomics of Environmental Salmonella: Engaging Students in the Microbiology and Bioinformatics of Foodborne Pathogens

in Systems Microbiology

Noah A. Greenman
Sophie K. Jurgensen
Charles P. Holmes
Curtis J. Kapsak
Raechel E. Davis
William M. Maza
Desiree Edemba
Bethany A. Esser
Selena M. Hise
Tara N. Keen

Frontiers in Microbiology

doi 10.3389/fmicb.2021.592422

6,664 views
5 citations

Original Research

Published on 20 Apr 2021

Metabolic Alterations in Shrimp Stomach During Acute Hepatopancreatic Necrosis Disease and Effects of Taurocholate on Vibrio parahaemolyticus

in Systems Microbiology

Ramya Kumar
Teng-Chun Tung
Tze Hann Ng
Che-Chih Chang
Yi-Lun Chen
Yi-Min Chen
Shih-Shun Lin
Han-Ching Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2021.631468

7,112 views
20 citations

Original Research

Published on 14 Apr 2021

Extensive Reannotation of the Genome of the Model Streptomycete Streptomyces lividans TK24 Based on Transcriptome and Proteome Information

in Systems Microbiology

Julian Droste
Christian Rückert
Jörn Kalinowski
Mohamed Belal Hamed
Jozef Anné
Kenneth Simoens
Kristel Bernaerts
Anastassios Economou
Tobias Busche

Frontiers in Microbiology

doi 10.3389/fmicb.2021.604034

4,890 views
5 citations

Original Research

Published on 14 Apr 2021

The Succession of the Gut Microbiota in Insects: A Dynamic Alteration of the Gut Microbiota During the Whole Life Cycle of Honey Bees (Apis cerana)

in Systems Microbiology

Zhi-Xiang Dong
Yi-Fei Chen
Huan-Yuan Li
Qi-He Tang
Jun Guo

Frontiers in Microbiology

doi 10.3389/fmicb.2021.513962

6,684 views
18 citations

Original Research

Published on 09 Apr 2021

Improvement of Free Fatty Acid Secretory Productivity in Aspergillus oryzae by Comprehensive Analysis on Time-Series Gene Expression

in Systems Microbiology

Pui Shan Wong
Koichi Tamano
Sachiyo Aburatani

Frontiers in Microbiology

doi 10.3389/fmicb.2021.605095

3,925 views
8 citations

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Articles

Reads Binning Improves the Assembly of Viral Genome Sequences From Metagenomic Samples

Implications of the Thermodynamic Response of Soil Mineralization, Respiration, and Nitrification on Soil Organic Matter Retention

Implementation of a Service-Learning Project Focused on Handwashing and Vaccinations Within an Undergraduate Microbiology Laboratory Course

Probiotics Bacillus licheniformis Improves Intestinal Health of Subclinical Necrotic Enteritis-Challenged Broilers

Alterations of Serum Metabolites and Fecal Microbiota Involved in Ewe Follicular Cyst

Computational Biology and Machine Learning Approaches to Understand Mechanistic Microbiome-Host Interactions

HCK and ABAA: A Newly Designed Pipeline to Improve Fungi Metabarcoding Analysis

Towards a Systems Biology Approach to Understanding the Lichen Symbiosis: Opportunities and Challenges of Implementing Network Modelling

The Composition of the Microbiota in the Full-Term Fetal Gut and Amniotic Fluid: A Bovine Cesarean Section Study

Correlation of Breed, Growth Performance, and Rumen Microbiota in Two Rustic Cattle Breeds Reared Under Different Conditions

Repulsive Guidance Molecule b Deficiency Induces Gut Microbiota Dysbiosis and Increases the Susceptibility to Intestinal Inflammation in Mice

Genomics of Environmental Salmonella: Engaging Students in the Microbiology and Bioinformatics of Foodborne Pathogens

Metabolic Alterations in Shrimp Stomach During Acute Hepatopancreatic Necrosis Disease and Effects of Taurocholate on Vibrio parahaemolyticus

Extensive Reannotation of the Genome of the Model Streptomycete Streptomyces lividans TK24 Based on Transcriptome and Proteome Information

The Succession of the Gut Microbiota in Insects: A Dynamic Alteration of the Gut Microbiota During the Whole Life Cycle of Honey Bees (Apis cerana)

Improvement of Free Fatty Acid Secretory Productivity in Aspergillus oryzae by Comprehensive Analysis on Time-Series Gene Expression