Original Research

Published on 08 Jan 2024

MDSVDNV: predicting microbe–drug associations by singular value decomposition and Node2vec

in Systems Microbiology

Huilin Tan
Zhen Zhang
Xin Liu
Yiming Chen
Zinuo Yang
Lei Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1303585

1,146 views
1 citation

Original Research

Published on 08 Jan 2024

Associations of central obesity and habitual food consumption with saliva microbiota and its enzymatic profiles – a pilot study in Finnish children

in Systems Microbiology

Nitin Agrawal
Federico Fontana
Chiara Tarracchini
Sohvi Lommi
Marco Ventura
Christian Milani
Heli Viljakainen

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1323346

2,143 views
1 citation

Editorial

Published on 08 Jan 2024

Editorial: Environments-pathogens-the gut microbiota and host diseases

in Systems Microbiology

Jinbo Xiong
Zunji Shi

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1357125

789 views
1 citation

Editorial

Published on 05 Jan 2024

Editorial: Mapping the exposome and investigating its role in human and environmental health

in Systems Microbiology

Peng Gao
Feng Ju
Chao Jiang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1353623

1,079 views

Original Research

Published on 03 Jan 2024

The impact of transitive annotation on the training of taxonomic classifiers

in Systems Microbiology

Harihara Subrahmaniam Muralidharan
Noam Y. Fox
Mihai Pop

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1240957

1,325 views
1 citation

Original Research

Published on 22 Dec 2023

The cause-and-effect relationship between gut microbiota abundance and carcinoid syndrome: a bidirectional Mendelian randomization study

in Systems Microbiology

Zexin Zhang
Dongting Li
Fengxi Xie
Gulizeba Muhetaer
Haibo Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1291699

3,236 views
6 citations

Original Research

Published on 22 Dec 2023

Metabolic profiling of petroleum-degrading microbial communities incubated under high-pressure conditions

in Systems Microbiology

Jinbo Xu
Lu Wang
Weifeng Lv
Xinmin Song
Yong Nie
Xiao-Lei Wu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1305731

2,924 views
2 citations

Original Research

Published on 22 Dec 2023

The causal effects between gut microbiota and hemorrhagic stroke: a bidirectional two-sample Mendelian randomization study

in Systems Microbiology

Yingjie Shen
Hao Liu
Xiangyi Meng
Aili Gao
Yansong Liu
Wei Ma
Hongsheng Liang
Fulan Hu

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1290909

3,677 views
5 citations

Original Research

Published on 20 Dec 2023

Role of gut microbiota and inflammatory factors in acute respiratory distress syndrome: a Mendelian randomization analysis

in Systems Microbiology

Jiawei Ma
Zigang Zhu
Yisikandeer Yishajiang
Khaloud Mohammed Alarjani
Lei Hong
Liang Luo

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1294692

3,707 views
1 citation

Original Research

Published on 18 Dec 2023

Gut microbiota functional profiling in autism spectrum disorders: bacterial VOCs and related metabolic pathways acting as disease biomarkers and predictors

in Systems Microbiology

Pamela Vernocchi
Chiara Marangelo
Silvia Guerrera
Federica Del Chierico
Valerio Guarrasi
Simone Gardini
Federica Conte
Paola Paci
Gianluca Ianiro
Antonio Gasbarrini

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1287350

3,829 views
2 citations

Original Research

Published on 15 Dec 2023

Rumen and fecal microbiomes are related to diet and production traits in Bos indicus beef cattle

in Systems Microbiology

Liliane Costa Conteville
Juliana Virginio da Silva
Bruno Gabriel Nascimento Andrade
Tainã Figueiredo Cardoso
Jennifer Jessica Bruscadin
Priscila Silva Neubern de Oliveira
Gerson Barreto Mourão
Luiz Lehmann Coutinho
Julio Cesar Pascale Palhares
Alexandre Berndt

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1282851

3,458 views

Technology and Code

Published on 14 Dec 2023

Automating methods for estimating metabolite volatility

in Systems Microbiology

Laura K. Meredith
S. Marshall Ledford
Kristina Riemer
Parker Geffre
Kelsey Graves
Linnea K. Honeker
David LeBauer
Malak M. Tfaily
Jordan Krechmer

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1267234

2,286 views
1 citation

Original Research

Published on 14 Dec 2023

An efficient model for predicting human diseases through miRNA based on multiple-types of contrastive learning

in Systems Microbiology

Qingquan Liao
Xiangzheng Fu
Linlin Zhuo
Hao Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1325001

1,022 views
1 citation

Original Research

Published on 12 Dec 2023

Uncovering a causal connection between the Lachnoclostridium genus in fecal microbiota and non-alcoholic fatty liver disease: a two-sample Mendelian randomization analysis

in Systems Microbiology

Wanhui Dai
Dandong Cai
Shuai Zhou
Ang Li
Jinsong Xie
Jie Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1276790

3,065 views
3 citations

Original Research

Published on 07 Dec 2023

Marvels of Bacilli in soil amendment for plant-growth promotion toward sustainable development having futuristic socio-economic implications

in Systems Microbiology

Meenakshi Mukhopadhyay
Ashutosh Mukherjee
Sayak Ganguli
Archisman Chakraborti
Samrat Roy
Sudeshna Shyam Choudhury
Vetriselvan Subramaniyan
Vinoth Kumarasamy
Amany A. Sayed
Fatma M. El-Demerdash

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1293302

4,237 views

Review

Published on 07 Dec 2023

Probiotic and postbiotic analytical methods: a perspective of available enumeration techniques

in Systems Microbiology

Marie-Eve Boyte
Andrzej Benkowski
Marco Pane
Hanan R. Shehata

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1304621

8,067 views
9 citations

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Articles

MDSVDNV: predicting microbe–drug associations by singular value decomposition and Node2vec

Associations of central obesity and habitual food consumption with saliva microbiota and its enzymatic profiles – a pilot study in Finnish children

Editorial: Environments-pathogens-the gut microbiota and host diseases

Editorial: Mapping the exposome and investigating its role in human and environmental health

The impact of transitive annotation on the training of taxonomic classifiers

The cause-and-effect relationship between gut microbiota abundance and carcinoid syndrome: a bidirectional Mendelian randomization study

Metabolic profiling of petroleum-degrading microbial communities incubated under high-pressure conditions

The causal effects between gut microbiota and hemorrhagic stroke: a bidirectional two-sample Mendelian randomization study

Role of gut microbiota and inflammatory factors in acute respiratory distress syndrome: a Mendelian randomization analysis

Gut microbiota functional profiling in autism spectrum disorders: bacterial VOCs and related metabolic pathways acting as disease biomarkers and predictors

Rumen and fecal microbiomes are related to diet and production traits in Bos indicus beef cattle

Automating methods for estimating metabolite volatility

An efficient model for predicting human diseases through miRNA based on multiple-types of contrastive learning

Uncovering a causal connection between the Lachnoclostridium genus in fecal microbiota and non-alcoholic fatty liver disease: a two-sample Mendelian randomization analysis

Marvels of Bacilli in soil amendment for plant-growth promotion toward sustainable development having futuristic socio-economic implications

Probiotic and postbiotic analytical methods: a perspective of available enumeration techniques