Frontiers in Microbiology | Systems Microbiology

Review

Published on 31 Jan 2025

Energy metabolism and the intestinal barrier: implications for understanding and managing intestinal diseases

in Systems Microbiology

Shuai Chen
Caifei Shen
Xiaorui Zeng
Luqiang Sun
Fangli Luo
Renhong Wan
Yupeng Zhang
Xinyun Chen
Yujun Hou
Wen Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1515364

202 views

Original Research

Published on 30 Jan 2025

Polygonatum kingianum polysaccharide alleviated intestinal injuries by mediating antioxidant ability and microbiota

in Systems Microbiology

Reng Qiu
Chuangye Pan
Yuxi Qin
Qianfei Wei
Yue Yu
Ying Zhang
Xuehan Xie
Jianqin Li
Shouhai Chen
Kun Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1492710

331 views

Original Research

Published on 29 Jan 2025

In vitro modeling of feline gut fermentation: a comprehensive analysis of fecal microbiota and metabolic activity

in Systems Microbiology

Qianle Ren
Yuling Li
Mingmei Duan
Jinjun Li
Fangshu Shi
Yun Zhou
Wanjing Hu
Junfu Mao
Xiaoqiong Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1515865

301 views

Original Research

Published on 27 Jan 2025

Machine learning models reveal microbial signatures in healthy human tissues, challenging the sterility of human organs

in Systems Microbiology

Anargyros Skoulakis
Giorgos Skoufos
Armen Ovsepian
Artemis G. Hatzigeorgiou

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1512304

477 views

Original Research

Published on 24 Jan 2025

Unveiling early-life microbial colonization profile through characterizing low-biomass maternal-infant microbiomes by 2bRAD-M

in Systems Microbiology

Shuwen Hou
Yuesong Jiang
Feng Zhang
Tianfan Cheng
Dan Zhao
Jilong Yao
Ping Wen
Lijian Jin
Shi Huang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1521108

431 views

Original Research

Published on 23 Jan 2025

The clinical prediction model to distinguish between colonization and infection by Klebsiella pneumoniae

in Systems Microbiology

Xiaoyu Zhang
Xifan Zhang
Deng Zhang
Jing Xu
Jingping Zhang
Xin Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1508030

348 views

Review

Published on 22 Jan 2025

Deep learning in microbiome analysis: a comprehensive review of neural network models

in Systems Microbiology

Piotr Przymus
Krzysztof Rykaczewski
Adrián Martín-Segura
Jaak Truu
Enrique Carrillo De Santa Pau
Mikhail Kolev
Irina Naskinova
Aleksandra Gruca
Alexia Sampri
Marcus Frohme

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1516667

996 views

Original Research

Published on 22 Jan 2025

BANNMDA: a computational model for predicting potential microbe–drug associations based on bilinear attention networks and nuclear norm minimization

in Systems Microbiology

Mingmin Liang
Xianzhi Liu
Juncai Li
Qijia Chen
Bin Zeng
Zhong Wang
Jing Li
Lei Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1497886

501 views

Systematic Review

Accepted on 21 Jan 2025

Systematic Review of Bidirectional Interaction Between Gut Microbiome, miRNAs, and Human Pathologies

in Systems Microbiology

Lorenzo Drago
Luigi Regenburgh De La Motte
Loredana Deflorio
Delia Francesca Sansico
Michela Salvatici
Emanuele Micaglio
Manuele Biazzo
Fabiana Giarritiello

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1540943

Original Research

Accepted on 21 Jan 2025

Responses of a soil-inhabiting collembolan (Entomobrya proxima Folsom) to organic fertilizer addition illustrated by functional traits and gut bacterial community

in Systems Microbiology

Xinyue Yang
Gang Li
Weiming Xiu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1509447

Original Research

Accepted on 20 Jan 2025

Intestinal Microbiota as Biomarkers for Different Colorectal Lesions Based on Colorectal Cancer Screening Participants in Community

in Systems Microbiology

Gairui Li
Dan Zhao
Binfa Ouyang
Yinggang Chen
Yashuang Zhao

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1529858

Original Research

Accepted on 16 Jan 2025

New Bitongling Regulates Gut Microbiota to Predict Angiogenesis in Rheumatoid Arthritis via the Gut-Joint Axis: A Deep Neural Network Approach

in Systems Microbiology

Yin Guan
Xiaoqian Zhao
Yun Lu
Yue Zhang
Yan Lu
Yue Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1528865

122 views

Editorial

Published on 16 Jan 2025

Editorial: Emerging technologies for viability enumeration of live microorganisms

in Systems Microbiology

Hanan R. Shehata
Marco Pane
Elna M. Buys
Binu Koshy
Christina S. Vegge
Jean L. Schoeni

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1546438

598 views

Original Research

Accepted on 15 Jan 2025

Taxonomic refinement of Bacillus thuringiensis

in Systems Microbiology

Nagham Shiekh
Reza Talaei-Hassanloui
Hamid Abachi
Sadegh Zarei
Ebrahim Osdaghi

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1518307

103 views

Original Research

Published on 15 Jan 2025

Potential geographical distribution of Cordyceps cicadae and its two hosts in China under climate change

in Systems Microbiology

Junyi Chen
Donglan He

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1519560

436 views

Editorial

Published on 14 Jan 2025

Editorial: Insights in systems microbiology: 2022/2023

in Systems Microbiology

Qi Zhao
Biswarup Sen
Davida S. Smyth
Fernando Luis Cônsoli

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1538030

533 views

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Articles

Energy metabolism and the intestinal barrier: implications for understanding and managing intestinal diseases

Polygonatum kingianum polysaccharide alleviated intestinal injuries by mediating antioxidant ability and microbiota

In vitro modeling of feline gut fermentation: a comprehensive analysis of fecal microbiota and metabolic activity

Machine learning models reveal microbial signatures in healthy human tissues, challenging the sterility of human organs

Unveiling early-life microbial colonization profile through characterizing low-biomass maternal-infant microbiomes by 2bRAD-M

The clinical prediction model to distinguish between colonization and infection by Klebsiella pneumoniae

Deep learning in microbiome analysis: a comprehensive review of neural network models

BANNMDA: a computational model for predicting potential microbe–drug associations based on bilinear attention networks and nuclear norm minimization

Systematic Review of Bidirectional Interaction Between Gut Microbiome, miRNAs, and Human Pathologies

Responses of a soil-inhabiting collembolan (Entomobrya proxima Folsom) to organic fertilizer addition illustrated by functional traits and gut bacterial community

Intestinal Microbiota as Biomarkers for Different Colorectal Lesions Based on Colorectal Cancer Screening Participants in Community

New Bitongling Regulates Gut Microbiota to Predict Angiogenesis in Rheumatoid Arthritis via the Gut-Joint Axis: A Deep Neural Network Approach

Editorial: Emerging technologies for viability enumeration of live microorganisms

Taxonomic refinement of Bacillus thuringiensis

Potential geographical distribution of Cordyceps cicadae and its two hosts in China under climate change

Editorial: Insights in systems microbiology: 2022/2023