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ORIGINAL RESEARCH article

Front. Microbiol.
Sec. Virology
Volume 15 - 2024 | doi: 10.3389/fmicb.2024.1502462

Viral diversity Genomic surveillance in wild rodents in the regions of Canaã de Carajás and Curionopólis, State of Pará, Brazil

Provisionally accepted
Adriana Freitas Moraes Monteiro Adriana Freitas Moraes Monteiro *Fábio Silva da Silva Fábio Silva da Silva *Ana Cecilia Ribeiro Cruz Ana Cecilia Ribeiro Cruz Sandro Patroca da Silva Sandro Patroca da Silva *Alice Louize Nunes Queiroz Alice Louize Nunes Queiroz *Livia Medeiros Neves Casseb Livia Medeiros Neves Casseb Livia Carício Martins Livia Carício Martins Daniele Barbosa de Almeida Medeiros Daniele Barbosa de Almeida Medeiros *
  • Seção de Arbovirologia e Febres Hemorrágicas, Instituto Evandro Chagas, Ananindeua, Brazil

The final, formatted version of the article will be published soon.

    Wild rodents serve as crucial reservoirs for zoonotic viruses. Anthropogenic and environmental disruptions, particularly those induced by mining activities, can destabilize rodent populations and facilitate the emergence of viral agents. In the Canaã dos Carajás and Curionópolis regions of Brazil, significant environmental changes have occurred due to mining expansion, potentially creating conditions conducive to the emergence of rodent-associated viral diseases. This study aimed to investigate the viral diversity in wild rodents captured in Canaã dos Carajás and Curionópolis, Pará, between 2017 and 2019. A total of 102 rodent samples were taxonomically identified through karyotyping and screened for anti-Orthohantavirus antibodies using the ELISA method. Subsequently, nucleotide sequencing and bioinformatics analyses were conducted on 14 selected samples to characterize the virome. This selection was based on the most commonly associated rodent genera as reservoirs of Orthohantavirus and Mammarenavirus. Of the 102 samples tested via ELISA, 100 were negative, and 2 showed optical density at the cutoff point. Sequencing of the 14 samples generated approximately 520 million reads, with 409 million retained after quality control. These reads were categorized into 53 viral families, including both DNA and RNA viruses, with Retroviridae, Baculoviridae, and Microviridae being the most abundant. Viral contigs were identified, including one fragment related to Arenaviridae and three to Filoviridae. Metagenomic analysis revealed high viral diversity in the sampled rodents, with the presence of viral families of public health concern, such as Arenaviridae and Filoviridae. The findings suggest that increased human activities associated with mining may contribute to the emergence of these viruses, underscoring the need for ongoing surveillance to prevent potential outbreaks.

    Keywords: Arenaviridae, Epidemiologic vigilance, Filoviridae, Metagenomics, Rodent Fonte: (Padrão) Times New Roman, 12 pt, Sem sublinhado Formatado: Fonte: (Padrão) Times New Roman, Sem sublinhado

    Received: 26 Sep 2024; Accepted: 10 Dec 2024.

    Copyright: © 2024 Monteiro, Silva, Cruz, Silva, Queiroz, Casseb, Martins and Medeiros. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence:
    Adriana Freitas Moraes Monteiro, Seção de Arbovirologia e Febres Hemorrágicas, Instituto Evandro Chagas, Ananindeua, Brazil
    Fábio Silva da Silva, Seção de Arbovirologia e Febres Hemorrágicas, Instituto Evandro Chagas, Ananindeua, Brazil
    Sandro Patroca da Silva, Seção de Arbovirologia e Febres Hemorrágicas, Instituto Evandro Chagas, Ananindeua, Brazil
    Alice Louize Nunes Queiroz, Seção de Arbovirologia e Febres Hemorrágicas, Instituto Evandro Chagas, Ananindeua, Brazil
    Daniele Barbosa de Almeida Medeiros, Seção de Arbovirologia e Febres Hemorrágicas, Instituto Evandro Chagas, Ananindeua, Brazil

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