Frontiers in Genetics | Computational Genomics

Original Research

Published on 18 Apr 2024

Single-cell and bulk RNAseq unveils the immune infiltration landscape and targeted therapeutic biomarkers of psoriasis

in Computational Genomics

Wenhui Deng
Yijiao Yan
Chengzhi Shi
Daoshun Sui

Frontiers in Genetics

doi 10.3389/fgene.2024.1365273

3,218 views

Original Research

Published on 18 Apr 2024

Identification of common genes and pathways between type 2 diabetes and COVID-19

in Computational Genomics

Ya Wang
Kai Li
Shuangyang Mo
Peishan Yao
Jiaxing Zeng
Shunyu Lu
Shanyu Qin

Frontiers in Genetics

doi 10.3389/fgene.2024.1249501

2,358 views
1 citation

Methods

Published on 16 Apr 2024

OGNNMDA: a computational model for microbe-drug association prediction based on ordered message-passing graph neural networks

in Computational Genomics

Jiabao Zhao
Linai Kuang
An Hu
Qi Zhang
Dinghai Yang
Chunxiang Wang

Frontiers in Genetics

doi 10.3389/fgene.2024.1370013

1,102 views
2 citations

Original Research

Published on 16 Apr 2024

iDNA-OpenPrompt: OpenPrompt learning model for identifying DNA methylation

in Computational Genomics

Xia Yu
Jia Ren
Haixia Long
Rao Zeng
Guoqiang Zhang
Anas Bilal
Yani Cui

Frontiers in Genetics

doi 10.3389/fgene.2024.1377285

1,365 views
10 citations

Original Research

Published on 10 Apr 2024

Critical gene signature and immunological characterization in peripheral vascular atherosclerosis: novel insights from mendelian randomization and transcriptomics

in Computational Genomics

Wei Xie
Shumin Chen
Hanqing Luo
Chuiyu Kong
Dongjin Wang

Frontiers in Genetics

doi 10.3389/fgene.2024.1361445

2,553 views

Original Research

Published on 08 Apr 2024

Unveiling the hub genes in the SIGLECs family in colon adenocarcinoma with machine learning

in Computational Genomics

Tiantian Li
Ji Yao

Frontiers in Genetics

doi 10.3389/fgene.2024.1375100

1,121 views

Original Research

Published on 05 Apr 2024

TMBcalc: a computational pipeline for identifying pan-cancer Tumor Mutational Burden gene signatures

in Computational Genomics

Grete Francesca Privitera
Salvatore Alaimo
Anna Caruso
Alfredo Ferro
Stefano Forte
Alfredo Pulvirenti

Frontiers in Genetics

doi 10.3389/fgene.2024.1285305

2,111 views
1 citation

Original Research

Published on 05 Apr 2024

Analysis of weighted gene co-expression networks and clinical validation identify hub genes and immune cell infiltration in the endometrial cells of patients with recurrent implantation failure

in Computational Genomics

Zhenteng Liu
Shoucui Lai
Qinglan Qu
Xuemei Liu
Wei Zhang
Dongmei Zhao
Shunzhi He
Yuxia Sun
Hongchu Bao

Frontiers in Genetics

doi 10.3389/fgene.2024.1292757

1,972 views

Methods

Published on 20 Mar 2024

Automated recognition of chromosome fusion using an alignment-free natural vector method

in Computational Genomics

Hongyu Yu
Stephen S.-T. Yau

Frontiers in Genetics

doi 10.3389/fgene.2024.1364951

1,794 views
1 citation

Original Research

Published on 18 Mar 2024

Transcriptome profiling and analysis of patients with esophageal squamous cell carcinoma from Kazakhstan

in Computational Genomics

Aigul Sharip
Saule Rakhimova
Askhat Molkenov
Ainur Ashenova
Ulan Kozhamkulov
Ilyas Akhmetollayev
Andrei Zinovyev
Yuri Zhukov
Marat Omarov
Mukhtar Tuleutaev

Frontiers in Genetics

doi 10.3389/fgene.2024.1249751

2,607 views
1 citation

Review

Published on 14 Mar 2024

Intelligent computation in cancer gene therapy

in Computational Genomics

Roee Samuel
Ramez Daniel

Frontiers in Genetics

doi 10.3389/fgene.2024.1252246

2,711 views
2 citations

Original Research

Published on 13 Mar 2024

PCGIMA: developing the web server for human position-defined CpG islands methylation analysis

in Computational Genomics

Ming Xiao
Yi Xiao
Jun Yu
Le Zhang

Frontiers in Genetics

doi 10.3389/fgene.2024.1367731

2,157 views

Original Research

Published on 05 Mar 2024

Flexible gold standards for transcription factor regulatory interactions in Escherichia coli K-12: architecture of evidence types

in Computational Genomics

Paloma Lara
Socorro Gama-Castro
Heladia Salgado
Claire Rioualen
Víctor H. Tierrafría
Luis J. Muñiz-Rascado
César Bonavides-Martínez
Julio Collado-Vides

Frontiers in Genetics

doi 10.3389/fgene.2024.1353553

1,494 views
2 citations

Original Research

Published on 01 Mar 2024

Finding potential lncRNA–disease associations using a boosting-based ensemble learning model

in Computational Genomics

Liqian Zhou
Xinhuai Peng
Lijun Zeng
Lihong Peng

Frontiers in Genetics

doi 10.3389/fgene.2024.1356205

2,268 views
2 citations

Original Research

Published on 29 Feb 2024

ACPPfel: Explainable deep ensemble learning for anticancer peptides prediction based on feature optimization

in Computational Genomics

Mingyou Liu
Tao Wu
Xue Li
Yingxue Zhu
Sen Chen
Jian Huang
Fengfeng Zhou
Hongmei Liu

Frontiers in Genetics

doi 10.3389/fgene.2024.1352504

2,818 views
7 citations

Original Research

Published on 29 Feb 2024

Establishment and analysis of artificial neural network diagnosis model for coagulation-related molecular subgroups in coronary artery disease

in Computational Genomics

Biwei Zheng
Yujing Li
Guoliang Xiong

Frontiers in Genetics

doi 10.3389/fgene.2024.1351774

1,414 views

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Articles

Single-cell and bulk RNAseq unveils the immune infiltration landscape and targeted therapeutic biomarkers of psoriasis

Identification of common genes and pathways between type 2 diabetes and COVID-19

OGNNMDA: a computational model for microbe-drug association prediction based on ordered message-passing graph neural networks

iDNA-OpenPrompt: OpenPrompt learning model for identifying DNA methylation

Critical gene signature and immunological characterization in peripheral vascular atherosclerosis: novel insights from mendelian randomization and transcriptomics

Unveiling the hub genes in the SIGLECs family in colon adenocarcinoma with machine learning

TMBcalc: a computational pipeline for identifying pan-cancer Tumor Mutational Burden gene signatures

Analysis of weighted gene co-expression networks and clinical validation identify hub genes and immune cell infiltration in the endometrial cells of patients with recurrent implantation failure

Automated recognition of chromosome fusion using an alignment-free natural vector method

Transcriptome profiling and analysis of patients with esophageal squamous cell carcinoma from Kazakhstan

Intelligent computation in cancer gene therapy

PCGIMA: developing the web server for human position-defined CpG islands methylation analysis

Flexible gold standards for transcription factor regulatory interactions in Escherichia coli K-12: architecture of evidence types

Finding potential lncRNA–disease associations using a boosting-based ensemble learning model

ACPPfel: Explainable deep ensemble learning for anticancer peptides prediction based on feature optimization

Establishment and analysis of artificial neural network diagnosis model for coagulation-related molecular subgroups in coronary artery disease