Frontiers in Genetics | Computational Genomics

Original Research

Published on 10 Jul 2024

GIHP: Graph convolutional neural network based interpretable pan-specific HLA-peptide binding affinity prediction

in Computational Genomics

Lingtao Su
Yan Yan
Bo Ma
Shiwei Zhao
Zhenyu Cui

Frontiers in Genetics

doi 10.3389/fgene.2024.1405032

1,315 views
1 citation

Original Research

Published on 09 Jul 2024

HapKled: a haplotype-aware structural variant calling approach for Oxford nanopore sequencing data

in Computational Genomics

Zhendong Zhang
Yue Liu
Xin Li
Yadong Liu
Yadong Wang
Tao Jiang

Frontiers in Genetics

doi 10.3389/fgene.2024.1435087

1,313 views

Original Research

Published on 01 Jul 2024

Bioinformatics analysis of the association between obesity and gastric cancer

in Computational Genomics

Xiaole Ma
Miao Cui
Yuntong Guo

Frontiers in Genetics

doi 10.3389/fgene.2024.1385559

1,674 views

Original Research

Published on 27 Jun 2024

Development and evaluation of a chronic kidney disease risk prediction model using random forest

in Computational Genomics

Krish Mendapara

Frontiers in Genetics

doi 10.3389/fgene.2024.1409755

2,205 views
1 citation

Original Research

Published on 26 Jun 2024

Identification of differentially expressed genes of blood leukocytes for Schizophrenia

in Computational Genomics

Feifan Wang
Yao Fan
Yinghui Li
Yuan Zhou
Xin Wang
Mengya Zhu
Xuefei Chen
Yong Xue
Chong Shen

Frontiers in Genetics

doi 10.3389/fgene.2024.1398240

1,577 views
2 citations

Original Research

Published on 21 Jun 2024

Integrative analysis of cancer multimodality data identifying COPS5 as a novel biomarker of diffuse large B-cell lymphoma

in Computational Genomics

Yutong Dai
Jingmei Li
Keita Yamamoto
Susumu Goyama
Martin Loza
Sung-Joon Park
Kenta Nakai

Frontiers in Genetics

doi 10.3389/fgene.2024.1407765

1,334 views

Original Research

Published on 21 Jun 2024

DeepSplice: a deep learning approach for accurate prediction of alternative splicing events in the human genome

in Computational Genomics

Mohammad Abrar
Didar Hussain
Izaz Ahmad Khan
Fasee Ullah
Mohd Anul Haq
Mohammed A. Aleisa
Abdullah Alenizi
Shashi Bhushan
Sheshikala Martha

Frontiers in Genetics

doi 10.3389/fgene.2024.1349546

1,946 views

Correction

Published on 18 Jun 2024

Corrigendum: Bipartite networks represent causality better than simple networks: Evidence, algorithms, and applications

in Computational Genomics

Bingran Shen
Gloria M. Coruzzi
Dennis Shasha

Frontiers in Genetics

doi 10.3389/fgene.2024.1440665

610 views

Original Research

Published on 18 Jun 2024

A comparative analysis of RNA-Seq and NanoString technologies in deciphering viral infection response in upper airway lung organoids

in Computational Genomics

Mostafa Rezapour
Stephen J. Walker
David A. Ornelles
Muhammad Khalid Khan Niazi
Patrick M. McNutt
Anthony Atala
Metin Nafi Gurcan

Frontiers in Genetics

doi 10.3389/fgene.2024.1327984

4,150 views
2 citations

Original Research

Published on 17 Jun 2024

Identification of DNA motif pairs on paired sequences based on composite heterogeneous graph

in Computational Genomics

Qiuqin Wu
Yang Li
Qi Wang
Xiaoyu Zhao
Duanchen Sun
Bingqiang Liu

Frontiers in Genetics

doi 10.3389/fgene.2024.1424085

1,034 views

Original Research

Published on 14 Jun 2024

DKPE-GraphSYN: a drug synergy prediction model based on joint dual kernel density estimation and positional encoding for graph representation

in Computational Genomics

Yunyun Dong
Yujie Bai
Haitao Liu
Ziting Yang
Yunqing Chang
Jianguang Li
Qixuan Han
Xiufang Feng
Xiaole Fan
Xiaoqiang Ren

Frontiers in Genetics

doi 10.3389/fgene.2024.1401544

1,152 views
1 citation

Original Research

Published on 11 Jun 2024

Uncovering periodontitis-associated markers through the aggregation of transcriptomics information from diverse sources

in Computational Genomics

Chujun Peng
Jinhang Huang
Mingyue Li
Guanru Liu
Lingxian Liu
Jiechun Lin
Weijun Sun
Hongtao Liu
Yonghui Huang
Xin Chen

Frontiers in Genetics

doi 10.3389/fgene.2024.1398582

1,403 views
1 citation

Original Research

Published on 10 Jun 2024

Single-cell analysis and machine learning identify psoriasis-associated CD8+ T cells serve as biomarker for psoriasis

in Computational Genomics

Sijia He
Lyuye Liu
Xiaoyan Long
Man Ge
Menghan Cai
Junling Zhang

Frontiers in Genetics

doi 10.3389/fgene.2024.1387875

1,611 views
5 citations

Systematic Review

Published on 06 Jun 2024

Bibliometric analysis of kinship analysis from 1960 to 2023: global trends and development

in Computational Genomics

Yanchen Liu
Chaoran Sun
Haoyuan Si
Zixuan Peng
Liya Gu
Xiangnan Guo
Feng Song

Frontiers in Genetics

doi 10.3389/fgene.2024.1401898

1,686 views

Original Research

Published on 05 Jun 2024

LGC-DBP: the method of DNA-binding protein identification based on PSSM and deep learning

in Computational Genomics

Yiqi Zhu
Ailun Sun

Frontiers in Genetics

doi 10.3389/fgene.2024.1411847

921 views
1 citation

Original Research

Published on 04 Jun 2024

Identification of apoptosis-immune-related gene signature and construction of diagnostic model for sepsis based on single-cell sequencing and bulk transcriptome analysis

in Computational Genomics

Zhongyi Sun
Yanan Hu
Jiachen Qu
Qiuyue Zhao
Han Gao
Zhiyong Peng

Frontiers in Genetics

doi 10.3389/fgene.2024.1389630

2,027 views

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Articles

GIHP: Graph convolutional neural network based interpretable pan-specific HLA-peptide binding affinity prediction

HapKled: a haplotype-aware structural variant calling approach for Oxford nanopore sequencing data

Bioinformatics analysis of the association between obesity and gastric cancer

Development and evaluation of a chronic kidney disease risk prediction model using random forest

Identification of differentially expressed genes of blood leukocytes for Schizophrenia

Integrative analysis of cancer multimodality data identifying COPS5 as a novel biomarker of diffuse large B-cell lymphoma

DeepSplice: a deep learning approach for accurate prediction of alternative splicing events in the human genome

Corrigendum: Bipartite networks represent causality better than simple networks: Evidence, algorithms, and applications

A comparative analysis of RNA-Seq and NanoString technologies in deciphering viral infection response in upper airway lung organoids

Identification of DNA motif pairs on paired sequences based on composite heterogeneous graph

DKPE-GraphSYN: a drug synergy prediction model based on joint dual kernel density estimation and positional encoding for graph representation

Uncovering periodontitis-associated markers through the aggregation of transcriptomics information from diverse sources

Single-cell analysis and machine learning identify psoriasis-associated CD8+ T cells serve as biomarker for psoriasis

Bibliometric analysis of kinship analysis from 1960 to 2023: global trends and development

LGC-DBP: the method of DNA-binding protein identification based on PSSM and deep learning

Identification of apoptosis-immune-related gene signature and construction of diagnostic model for sepsis based on single-cell sequencing and bulk transcriptome analysis