Frontiers in Genetics | Computational Genomics

Original Research

Published on 12 Aug 2024

Prognostic value of four immune-related genes in lower-grade gliomas: a biomarker discovery study

in Computational Genomics

Shuowen Wang
Zijun Wang
Zhuo Liu
Jianxin Wu

Frontiers in Genetics

doi 10.3389/fgene.2024.1403587

1,249 views

Original Research

Published on 09 Aug 2024

TF-EPI: an interpretable enhancer-promoter interaction detection method based on Transformer

in Computational Genomics

Bowen Liu
Weihang Zhang
Xin Zeng
Martin Loza
Sung-Joon Park
Kenta Nakai

Frontiers in Genetics

doi 10.3389/fgene.2024.1444459

1,856 views

Original Research

Published on 08 Aug 2024

Integrative analysis reveals novel insights into juvenile idiopathic arthritis pathogenesis and shared molecular pathways with associated traits

in Computational Genomics

N. Pudjihartono
D. Ho
J. M. O’Sullivan

Frontiers in Genetics

doi 10.3389/fgene.2024.1448363

2,387 views

Original Research

Published on 02 Aug 2024

MSFN: a multi-omics stacked fusion network for breast cancer survival prediction

in Computational Genomics

Ge Zhang
Chenwei Ma
Chaokun Yan
Huimin Luo
Jianlin Wang
Wenjuan Liang
Junwei Luo

Frontiers in Genetics

doi 10.3389/fgene.2024.1378809

1,260 views

Original Research

Published on 30 Jul 2024

Exploring the molecular landscape of osteosarcoma through PTTG family genes using a detailed multi-level methodology

in Computational Genomics

Yulin Lu
Danjun Wang
Guoao Chen
Zitong Shan
Dongmei Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1431668

1,118 views
2 citations

Original Research

Published on 29 Jul 2024

The identification and expression analysis of walnut Acyl-ACP thioesterases

in Computational Genomics

Hui Wang
Jianqing Shi
Wanhui Guo
Xiaohui Sun
Shuhui Niu
Li Chen
Shenghong Liu
Lei Ma

Frontiers in Genetics

doi 10.3389/fgene.2024.1409159

1,009 views

Original Research

Published on 26 Jul 2024

Identification and experimental validation of programmed cell death- and mitochondria-associated biomarkers in osteoporosis and immune microenvironment

in Computational Genomics

Xiu Yang
Zheng-Chao Zhang
Yun-Nan Lu
Han-Lin Chen
Hong-Shen Wang
Tao Lin
Qing-Quan Chen
Jin-Shui Chen
Wu-Bing He

Frontiers in Genetics

doi 10.3389/fgene.2024.1439171

1,770 views

Methods

Published on 26 Jul 2024

AsmMix: an efficient haplotype-resolved hybrid de novo genome assembling pipeline

in Computational Genomics

Chao Liu
Pei Wu
Xue Wu
Xia Zhao
Fang Chen
Xiaofang Cheng
Hongmei Zhu
Ou Wang
Mengyang Xu

Frontiers in Genetics

doi 10.3389/fgene.2024.1421565

1,446 views

Original Research

Published on 24 Jul 2024

Identification and validation of aging-related genes in neuropathic pain using bioinformatics

in Computational Genomics

Hui Gao
Guoqi Dong
Yong Yao
Huayuan Yang

Frontiers in Genetics

doi 10.3389/fgene.2024.1430275

2,246 views

Correction

Published on 16 Jul 2024

Corrigendum: Hyperglycemia decreases epithelial cell proliferation and attenuates neutrophil activity by reducing ICAM-1 and LFA-1 expression levels

in Computational Genomics

Dongxu Qiu
Lei Zhang
Junkun Zhan
Qiong Yang
Hongliang Xiong
Weitong Hu
Qiao Ji
Jiabing Huang

Frontiers in Genetics

doi 10.3389/fgene.2024.1431933

598 views

Original Research

Published on 16 Jul 2024

An integrated bioinformatics analysis to identify the shared biomarkers in patients with obstructive sleep apnea syndrome and nonalcoholic fatty liver disease

in Computational Genomics

Rou Zhang
Zhijuan Liu
Ran Li
Xiaona Wang
Li Ai
Yongxia Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1356105

1,856 views

Original Research

Published on 15 Jul 2024

MGPPI: multiscale graph neural networks for explainable protein–protein interaction prediction

in Computational Genomics

Shiwei Zhao
Zhenyu Cui
Gonglei Zhang
Yanlong Gong
Lingtao Su

Frontiers in Genetics

doi 10.3389/fgene.2024.1440448

1,467 views

Original Research

Published on 11 Jul 2024

Cross-species single-cell landscapes identify the pathogenic gene characteristics of inherited retinal diseases

in Computational Genomics

Hualei Hu
Fei Liu
Pan Gao
Yuwen Huang
Danna Jia
Jamas Reilly
Xiang Chen
Yunqiao Han
Kui Sun
Jiong Luo

Frontiers in Genetics

doi 10.3389/fgene.2024.1409016

2,145 views

Original Research

Published on 10 Jul 2024

Relationships between systemic sclerosis and atherosclerosis: screening for mitochondria-related biomarkers

in Computational Genomics

Fei Wang
Xiao Yan Lyu
Yi Ming Qin
Mei Juan Xie

Frontiers in Genetics

doi 10.3389/fgene.2024.1375331

2,220 views

Methods

Published on 10 Jul 2024

PSPI: A deep learning approach for prokaryotic small protein identification

in Computational Genomics

Matthew Weston
Haiyan Hu
Xiaoman Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1439423

1,348 views

Original Research

Published on 10 Jul 2024

Stacked generalization as a computational method for the genomic selection

in Computational Genomics

Sunhee Kim
Sang-Ho Chu
Yong-Jin Park
Chang-Yong Lee

Frontiers in Genetics

doi 10.3389/fgene.2024.1401470

862 views

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Articles

Prognostic value of four immune-related genes in lower-grade gliomas: a biomarker discovery study

TF-EPI: an interpretable enhancer-promoter interaction detection method based on Transformer

Integrative analysis reveals novel insights into juvenile idiopathic arthritis pathogenesis and shared molecular pathways with associated traits

MSFN: a multi-omics stacked fusion network for breast cancer survival prediction

Exploring the molecular landscape of osteosarcoma through PTTG family genes using a detailed multi-level methodology

The identification and expression analysis of walnut Acyl-ACP thioesterases

Identification and experimental validation of programmed cell death- and mitochondria-associated biomarkers in osteoporosis and immune microenvironment

AsmMix: an efficient haplotype-resolved hybrid de novo genome assembling pipeline

Identification and validation of aging-related genes in neuropathic pain using bioinformatics

Corrigendum: Hyperglycemia decreases epithelial cell proliferation and attenuates neutrophil activity by reducing ICAM-1 and LFA-1 expression levels

An integrated bioinformatics analysis to identify the shared biomarkers in patients with obstructive sleep apnea syndrome and nonalcoholic fatty liver disease

MGPPI: multiscale graph neural networks for explainable protein–protein interaction prediction

Cross-species single-cell landscapes identify the pathogenic gene characteristics of inherited retinal diseases

Relationships between systemic sclerosis and atherosclerosis: screening for mitochondria-related biomarkers

PSPI: A deep learning approach for prokaryotic small protein identification

Stacked generalization as a computational method for the genomic selection