Frontiers in Genetics | Computational Genomics

Original Research

Published on 15 Nov 2024

Subtyping colorectal cancer based on septic shock-associated genes: prognosis and immune characteristics

in Computational Genomics

Jinkai Zhao
Jiaan Chen
Jiancheng Zhang
Xuming Pan
Buhai Xu
Jinli Miao
Wenmin Wang
Guangjun Jin

Frontiers in Genetics

doi 10.3389/fgene.2024.1468424

736 views

Original Research

Published on 14 Nov 2024

Multi-fusion strategy network-guided cancer subtypes discovering based on multi-omics data

in Computational Genomics

Jian Liu
Xinzheng Xue
Pengbo Wen
Qian Song
Jun Yao
Shuguang Ge

Frontiers in Genetics

doi 10.3389/fgene.2024.1466825

849 views

Review

Published on 13 Nov 2024

What are microsatellites and how to choose the best tool: a user-friendly review of SSR and 74 SSR mining tools

in Computational Genomics

Sandy Ingrid Aguiar Alves
Carlos Willian Dias Dantas
Daralyns Borges Macedo
Rommel Thiago Jucá Ramos

Frontiers in Genetics

doi 10.3389/fgene.2024.1474611

1,530 views
1 citation

Original Research

Published on 13 Nov 2024

Comprehensive analysis of molecular mechanisms underlying kidney stones: gene expression profiles and potential diagnostic markers

in Computational Genomics

Kaisaier Aji
Aierken Aikebaier
Asimujiang Abula
Guang Lu Song

Frontiers in Genetics

doi 10.3389/fgene.2024.1440774

1,134 views

Original Research

Published on 13 Nov 2024

Integrative analysis of single-cell transcriptomic and multilayer signaling networks in glioma reveal tumor progression stage

in Computational Genomics

Fereshteh Fallah Atanaki
Leila Mirsadeghi
Mohsen Riahi Manesh
Kaveh Kavousi

Frontiers in Genetics

doi 10.3389/fgene.2024.1446903

1,100 views

Original Research

Published on 12 Nov 2024

PSATF-6mA: an integrated learning fusion feature-encoded DNA-6 mA methylcytosine modification site recognition model based on attentional mechanisms

in Computational Genomics

Yanmei Kang
Hongyuan Wang
Yubo Qin
Guanlin Liu
Yi Yu
Yongjian Zhang

Frontiers in Genetics

doi 10.3389/fgene.2024.1498884

491 views

Original Research

Published on 11 Nov 2024

AI-enabled pipeline for virus detection, validation, and SNP discovery from next-generation sequencing data

in Computational Genomics

Abozar Ghorbani
Mahsa Rostami
Pietro Hiram Guzzi

Frontiers in Genetics

doi 10.3389/fgene.2024.1492752

1,408 views

Editorial

Published on 05 Nov 2024

Editorial: Emerging talents in computational genomics

in Computational Genomics

Junichi Iwata
Kenta Nakai

Frontiers in Genetics

doi 10.3389/fgene.2024.1512594

508 views

Original Research

Published on 05 Nov 2024

Genome-wide comparative analysis of photosynthetic enzymatic genes provides novel insights into foxtail millet and other cereals

in Computational Genomics

Arpit Raturi
Shivam Shekhar
Ratnesh Kumar Jha
Divya Chauhan
Saurabh Pandey
Sarita Kumari
Ashutosh Singh

Frontiers in Genetics

doi 10.3389/fgene.2024.1449113

836 views

Original Research

Published on 29 Oct 2024

Number of human protein interactions correlates with structural, but not regulatory conservation of the respective genes

in Computational Genomics

Rijalda Mekic
Marianna A. Zolotovskaia
Maksim Sorokin
Tharaa Mohammad
Nina Shaban
Ivan Musatov
Victor Tkachev
Alexander Modestov
Alexander Simonov
Denis Kuzmin

Frontiers in Genetics

doi 10.3389/fgene.2024.1472638

1,084 views

Original Research

Published on 28 Oct 2024

TargetCall: eliminating the wasted computation in basecalling via pre-basecalling filtering

in Computational Genomics

Meryem Banu Cavlak
Gagandeep Singh
Mohammed Alser
Can Firtina
Joël Lindegger
Mohammad Sadrosadati
Nika Mansouri Ghiasi
Can Alkan
Onur Mutlu

Frontiers in Genetics

doi 10.3389/fgene.2024.1429306

641 views

Methods

Published on 25 Oct 2024

GTasm: a genome assembly method using graph transformers and HiFi reads

in Computational Genomics

Junwei Luo
Ziheng Zhang
Xinliang Ma
Chaokun Yan
Huimin Luo

Frontiers in Genetics

doi 10.3389/fgene.2024.1495657

967 views

Original Research

Published on 22 Oct 2024

Dinucleotide composition representation -based deep learning to predict scoliosis-associated Fibrillin-1 genotypes

in Computational Genomics

Sen Zhang
Li-Na Dai
Qi Yin
Xiao-Ping Kang
Dan-Dan Zeng
Tao Jiang
Guang-Yu Zhao
Xiao-He Li
Jing Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1492226

814 views

Original Research

Published on 16 Oct 2024

Identification of potential therapeutic targets for systemic lupus erythematosus based on GEO database analysis and Mendelian randomization analysis

in Computational Genomics

Aishanjiang Apaer
Yanyan Shi
Alimijiang Aobulitalifu
Fujie Wen
Adalaiti Muhetaer
Nuermaimaiti Ajimu
Maierhaba Sulitan
Lei Cheng

Frontiers in Genetics

doi 10.3389/fgene.2024.1454486

2,608 views
1 citation

Original Research

Published on 02 Oct 2024

TCRcost: a deep learning model utilizing TCR 3D structure for enhanced of TCR–peptide binding

in Computational Genomics

Fan Li
Xinyang Qian
Xiaoyan Zhu
Xin Lai
Xuanping Zhang
Jiayin Wang

Frontiers in Genetics

doi 10.3389/fgene.2024.1346784

990 views
1 citation

Original Research

Published on 01 Oct 2024

Transparent sparse graph pathway network for analyzing the internal relationship of lung cancer

in Computational Genomics

Zhibin Jin
Yuhu Shi
Lili Zhou

Frontiers in Genetics

doi 10.3389/fgene.2024.1437174

602 views

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Articles

Subtyping colorectal cancer based on septic shock-associated genes: prognosis and immune characteristics

Multi-fusion strategy network-guided cancer subtypes discovering based on multi-omics data

What are microsatellites and how to choose the best tool: a user-friendly review of SSR and 74 SSR mining tools

Comprehensive analysis of molecular mechanisms underlying kidney stones: gene expression profiles and potential diagnostic markers

Integrative analysis of single-cell transcriptomic and multilayer signaling networks in glioma reveal tumor progression stage

PSATF-6mA: an integrated learning fusion feature-encoded DNA-6 mA methylcytosine modification site recognition model based on attentional mechanisms

AI-enabled pipeline for virus detection, validation, and SNP discovery from next-generation sequencing data

Editorial: Emerging talents in computational genomics

Genome-wide comparative analysis of photosynthetic enzymatic genes provides novel insights into foxtail millet and other cereals

Number of human protein interactions correlates with structural, but not regulatory conservation of the respective genes

TargetCall: eliminating the wasted computation in basecalling via pre-basecalling filtering

GTasm: a genome assembly method using graph transformers and HiFi reads

Dinucleotide composition representation -based deep learning to predict scoliosis-associated Fibrillin-1 genotypes

Identification of potential therapeutic targets for systemic lupus erythematosus based on GEO database analysis and Mendelian randomization analysis

TCRcost: a deep learning model utilizing TCR 3D structure for enhanced of TCR–peptide binding

Transparent sparse graph pathway network for analyzing the internal relationship of lung cancer