Frontiers in Genetics | Computational Genomics

Original Research

Published on 06 Feb 2025

Exploring the relationship between sepsis and Golgi apparatus dysfunction: bioinformatics insights and diagnostic marker discovery

in Computational Genomics

Wanli Ma
Xinyi Liu
Ran Yu
Jiannan Song
Lina Hou
Ying Guo
Hongwei Wu
Dandan Feng
Qi Zhou
Haibo Li

Frontiers in Genetics

doi 10.3389/fgene.2025.1483493

418 views

Editorial

Published on 05 Feb 2025

Editorial: Towards the embedding of artificial intelligence into synthetic organisms: engineering intelligence in microorganisms

in Computational Genomics

Martín Eduardo Gutiérrez
Rafael Lahoz-Beltrá
Alberto J. Donayre-Torres

Frontiers in Genetics

doi 10.3389/fgene.2025.1562092

501 views

Methods

Accepted on 04 Feb 2025

STsisal: A Reference-Free Deconvolution Pipeline for Spatial Transcriptomics Data

in Computational Genomics

Yinghao Fu
Leqi Tian
Weiwei Zhang

Frontiers in Genetics

doi 10.3389/fgene.2025.1512435

Original Research

Published on 04 Feb 2025

A structural genomics approach to investigate Dystrophin mutations and their impact on the molecular pathways of Duchenne muscular dystrophy

in Computational Genomics

Abdelbaset Mohamed Elasbali
Farah Anjum
Osama A. AlKhamees
Waleed Abu Al-Soud
Mohd Adnan
Anas Shamsi
Md. Imtaiyaz Hassan

Frontiers in Genetics

doi 10.3389/fgene.2025.1517707

672 views

Original Research

Accepted on 31 Jan 2025

Predicting Diabetes Complications from Electronic Health Record Visits Using

in Computational Genomics

Daniel Voskergian
Malik Yousef
Burcu Bakir-Gungor

Frontiers in Genetics

doi 10.3389/fgene.2025.1451290

Original Research

Published on 29 Jan 2025

Identifying health risk determinants and molecular targets in patients with idiopathic pulmonary fibrosis via combined differential and weighted gene co-expression analysis

in Computational Genomics

Abu Tayab Moin
Md. Asad Ullah
Jannatul Ferdous Nipa
Mohammad Sheikh Farider Rahman
Afsana Emran
Md. Minhazul Islam
Swapnil Das
Tawsif Al Arian
Mohammad Mahfuz Enam Elahi
Mukta Akter

Frontiers in Genetics

doi 10.3389/fgene.2024.1496462

1,108 views

Original Research

Published on 29 Jan 2025

Antimicrobial resistance in diverse urban microbiomes: uncovering patterns and predictive markers

in Computational Genomics

Rodolfo Brizola Toscan
Wojciech Lesiński
Piotr Stomma
Balakrishnan Subramanian
Paweł P. Łabaj
Witold R. Rudnicki

Frontiers in Genetics

doi 10.3389/fgene.2025.1460508

626 views

Original Research

Published on 29 Jan 2025

Quadratic descriptors and reduction methods in a two-layered model for compound inference

in Computational Genomics

Jianshen Zhu
Naveed Ahmed Azam
Shengjuan Cao
Ryota Ido
Kazuya Haraguchi
Liang Zhao
Hiroshi Nagamochi
Tatsuya Akutsu

Frontiers in Genetics

doi 10.3389/fgene.2024.1483490

385 views

Brief Research Report

Published on 27 Jan 2025

Characterization of novel human endogenous retrovirus structures on chromosomes 6 and 7

in Computational Genomics

Nicholas Pasternack
Ole Paulsen
Avindra Nath

Frontiers in Genetics

doi 10.3389/fgene.2025.1498978

544 views

Original Research

Published on 22 Jan 2025

In silico design of an epitope-based vaccine ensemble for fasliolopsiasis

in Computational Genomics

Ruchishree Konhar
Kanhu Charan Das
Aiboklang Nongrum
Rohan Raj Samal
Shailesh Kumar Sarangi
Devendra Kumar Biswal

Frontiers in Genetics

doi 10.3389/fgene.2024.1451853

696 views

Original Research

Published on 22 Jan 2025

Machine learning potential predictor of idiopathic pulmonary fibrosis

in Computational Genomics

Chenchun Ding
Quan Liao
Renjie Zuo
Shichao Zhang
Zhenzhen Guo
Junjie He
Ziwei Ye
Weibin Chen
Sunkui Ke

Frontiers in Genetics

doi 10.3389/fgene.2024.1464471

1,027 views

Original Research

Published on 15 Jan 2025

Exploring prognosis and therapeutic strategies for HBV-HCC patients based on disulfidptosis-related genes

in Computational Genomics

Chuankuo Zhang
Xing Zhang
Shengjie Dai
Wenjun Yang

Frontiers in Genetics

doi 10.3389/fgene.2024.1522484

1,090 views

Original Research

Published on 08 Jan 2025

Integration of single-cell transcriptomics and bulk transcriptomics to explore prognostic and immunotherapeutic characteristics of nucleotide metabolism in lung adenocarcinoma

in Computational Genomics

Kai Zhang
Luyao Wang
Huili Chen
Lili Deng
Mengling Hu
Ziqiang Wang
Yiluo Xie
Chaoqun Lian
Xiaojing Wang
Jing Zhang

Frontiers in Genetics

doi 10.3389/fgene.2024.1466249

715 views

Original Research

Published on 06 Jan 2025

S-DCNN: prediction of ATP binding residues by deep convolutional neural network based on SMOTE

in Computational Genomics

Sixi Hao
Cai-Yan Li
Xiuzhen Hu
Zhenxing Feng
Gaimei Zhang
Caiyun Yang
Huimin Hu

Frontiers in Genetics

doi 10.3389/fgene.2024.1513201

260 views

Original Research

Published on 06 Jan 2025

The analysis of gene co-expression network and immune infiltration revealed biomarkers between triple-negative and non-triple negative breast cancer

in Computational Genomics

Yao Yi
Yu Zhong
Lianhua Xie
Shuxian Lu
Yifeng Zhang

Frontiers in Genetics

doi 10.3389/fgene.2024.1505011

744 views

Original Research

Published on 06 Jan 2025

BIMSSA: enhancing cancer prediction with salp swarm optimization and ensemble machine learning approaches

in Computational Genomics

Pinakshi Panda
Sukant Kishoro Bisoy
Amrutanshu Panigrahi
Abhilash Pati
Bibhuprasad Sahu
Zheshan Guo
Haipeng Liu
Prince Jain

Frontiers in Genetics

doi 10.3389/fgene.2024.1491602

1,067 views
1 citation

Navigation group

Articles

Exploring the relationship between sepsis and Golgi apparatus dysfunction: bioinformatics insights and diagnostic marker discovery

Editorial: Towards the embedding of artificial intelligence into synthetic organisms: engineering intelligence in microorganisms

STsisal: A Reference-Free Deconvolution Pipeline for Spatial Transcriptomics Data

A structural genomics approach to investigate Dystrophin mutations and their impact on the molecular pathways of Duchenne muscular dystrophy

Predicting Diabetes Complications from Electronic Health Record Visits Using

Identifying health risk determinants and molecular targets in patients with idiopathic pulmonary fibrosis via combined differential and weighted gene co-expression analysis

Antimicrobial resistance in diverse urban microbiomes: uncovering patterns and predictive markers

Quadratic descriptors and reduction methods in a two-layered model for compound inference

Characterization of novel human endogenous retrovirus structures on chromosomes 6 and 7

In silico design of an epitope-based vaccine ensemble for fasliolopsiasis

Machine learning potential predictor of idiopathic pulmonary fibrosis

Exploring prognosis and therapeutic strategies for HBV-HCC patients based on disulfidptosis-related genes

Integration of single-cell transcriptomics and bulk transcriptomics to explore prognostic and immunotherapeutic characteristics of nucleotide metabolism in lung adenocarcinoma

S-DCNN: prediction of ATP binding residues by deep convolutional neural network based on SMOTE

The analysis of gene co-expression network and immune infiltration revealed biomarkers between triple-negative and non-triple negative breast cancer

BIMSSA: enhancing cancer prediction with salp swarm optimization and ensemble machine learning approaches