Frontiers in Genetics | Computational Genomics

Original Research

Published on 24 Aug 2023

An efficient convolutional neural network-based diagnosis system for citrus fruit diseases

in Computational Genomics

Zhangcai Huang
Xiaoxiao Jiang
Shaodong Huang
Sheng Qin
Su Yang

Frontiers in Genetics

doi 10.3389/fgene.2023.1253934

2,265 views
5 citations

Original Research

Published on 23 Aug 2023

PSF toolkit: an R package for pathway curation and topology-aware analysis

in Computational Genomics

Siras Hakobyan
Ani Stepanyan
Lilit Nersisyan
Hans Binder
Arsen Arakelyan

Frontiers in Genetics

doi 10.3389/fgene.2023.1264656

3,547 views
3 citations

Original Research

Published on 21 Aug 2023

GeNetOntology: identifying affected gene ontology terms via grouping, scoring, and modeling of gene expression data utilizing biological knowledge-based machine learning

in Computational Genomics

Nur Sebnem Ersoz
Burcu Bakir-Gungor
Malik Yousef

Frontiers in Genetics

doi 10.3389/fgene.2023.1139082

4,007 views
11 citations

Original Research

Published on 21 Aug 2023

Identification and verification of novel immune-related ferroptosis signature with excellent prognostic predictive and clinical guidance value in hepatocellular carcinoma

in Computational Genomics

Wenxiu Jiang
Lili Wang
Yajuan Zhang
Hongliang Li

Frontiers in Genetics

doi 10.3389/fgene.2023.1112744

1,632 views

Brief Research Report

Published on 21 Aug 2023

Comparative evaluation and analysis of DNA N4-methylcytosine methylation sites using deep learning

in Computational Genomics

Hong Ju
Jie Bai
Jing Jiang
Yusheng Che
Xin Chen

Frontiers in Genetics

doi 10.3389/fgene.2023.1254827

1,576 views
1 citation

Technology and Code

Published on 17 Aug 2023

Accelerated matrix-vector multiplications for matrices involving genotype covariates with applications in genomic prediction

in Computational Genomics

Alexander Freudenberg
Jeremie Vandenplas
Martin Schlather
Torsten Pook
Ross Evans
Jan Ten Napel

Frontiers in Genetics

doi 10.3389/fgene.2023.1220408

2,325 views
1 citation

Original Research

Published on 16 Aug 2023

Identification of shared biological features in four different lung cell lines infected with SARS-CoV-2 virus through RNA-seq analysis

in Computational Genomics

Xiaoxi Zhang
Seungjun Ahn
Peihua Qiu
Somnath Datta

Frontiers in Genetics

doi 10.3389/fgene.2023.1235927

1,900 views

Methods

Published on 10 Aug 2023

Fully automated annotation of mitochondrial genomes using a cluster-based approach with de Bruijn graphs

in Computational Genomics

Lisa Fiedler
Martin Middendorf
Matthias Bernt

Frontiers in Genetics

doi 10.3389/fgene.2023.1250907

4,202 views
2 citations

Perspective

Published on 10 Aug 2023

Unraveling patient heterogeneity in complex diseases through individualized co-expression networks: a perspective

in Computational Genomics

Verónica Latapiat
Mauricio Saez
Inti Pedroso
Alberto J. M. Martin

Frontiers in Genetics

doi 10.3389/fgene.2023.1209416

3,063 views
4 citations

Original Research

Published on 09 Aug 2023

Natural selection shapes the evolution of SARS-CoV-2 Omicron in Bangladesh

in Computational Genomics

Mohammad Tanbir Habib
Saikt Rahman
Mokibul Hassan Afrad
Arif Mahmud Howlader
Manjur Hossain Khan
Farhana Khanam
Ahmed Nawsher Alam
Emran Kabir Chowdhury
Ziaur Rahman
Mustafizur Rahman

Frontiers in Genetics

doi 10.3389/fgene.2023.1220906

3,242 views
3 citations

Methods

Published on 08 Aug 2023

iLncDA-RSN: identification of lncRNA-disease associations based on reliable similarity networks

in Computational Genomics

Yahan Li
Mingrui Zhang
Junliang Shang
Feng Li
Qianqian Ren
Jin-Xing Liu

Frontiers in Genetics

doi 10.3389/fgene.2023.1249171

1,229 views

Editorial

Published on 04 Aug 2023

Editorial: Deep learning for disease prediction in next-generation sequencing and biomedical imaging data

in Computational Genomics

Saurav Mallik
Junichi Iwata
Ruifeng Hu
Tapas Si

Frontiers in Genetics

doi 10.3389/fgene.2023.1260940

1,739 views

Original Research

Published on 04 Aug 2023

Immune-related gene IL17RA as a diagnostic marker in osteoporosis

in Computational Genomics

Ya-Jun Deng
Zhi Li
Bo Wang
Jie Li
Jun Ma
Xiong Xue
Xin Tian
Quan-Cheng Liu
Ying Zhang
Bin Yuan

Frontiers in Genetics

doi 10.3389/fgene.2023.1219894

2,407 views
1 citation

Brief Research Report

Published on 02 Aug 2023

The pursuit of genetic gain in agricultural crops through the application of machine-learning to genomic prediction

in Computational Genomics

Darcy Jones
Roberta Fornarelli
Mark Derbyshire
Mark Gibberd
Kathryn Barker
James Hane

Frontiers in Genetics

doi 10.3389/fgene.2023.1186782

2,057 views
2 citations

Original Research

Published on 01 Aug 2023

Computational analysis of heat shock proteins and ferroptosis-associated lncRNAs to predict prognosis in acute myeloid leukemia patients

in Computational Genomics

Fangfang Ge
Yulu Wang
Amit Sharma
Ulrich Jaehde
Markus Essler
Matthias Schmid
Ingo G. H. Schmidt-Wolf

Frontiers in Genetics

doi 10.3389/fgene.2023.1218276

2,091 views
2 citations

Original Research

Published on 28 Jul 2023

Bioinformatic analysis reveals lysosome-related biomarkers and molecular subtypes in preeclampsia: novel insights into the pathogenesis of preeclampsia

in Computational Genomics

Yao Chen
Miao Liu
Yonghong Wang

Frontiers in Genetics

doi 10.3389/fgene.2023.1228110

2,215 views
3 citations

Navigation group

Articles

An efficient convolutional neural network-based diagnosis system for citrus fruit diseases

PSF toolkit: an R package for pathway curation and topology-aware analysis

GeNetOntology: identifying affected gene ontology terms via grouping, scoring, and modeling of gene expression data utilizing biological knowledge-based machine learning

Identification and verification of novel immune-related ferroptosis signature with excellent prognostic predictive and clinical guidance value in hepatocellular carcinoma

Comparative evaluation and analysis of DNA N4-methylcytosine methylation sites using deep learning

Accelerated matrix-vector multiplications for matrices involving genotype covariates with applications in genomic prediction

Identification of shared biological features in four different lung cell lines infected with SARS-CoV-2 virus through RNA-seq analysis

Fully automated annotation of mitochondrial genomes using a cluster-based approach with de Bruijn graphs

Unraveling patient heterogeneity in complex diseases through individualized co-expression networks: a perspective

Natural selection shapes the evolution of SARS-CoV-2 Omicron in Bangladesh

iLncDA-RSN: identification of lncRNA-disease associations based on reliable similarity networks

Editorial: Deep learning for disease prediction in next-generation sequencing and biomedical imaging data

Immune-related gene IL17RA as a diagnostic marker in osteoporosis

The pursuit of genetic gain in agricultural crops through the application of machine-learning to genomic prediction

Computational analysis of heat shock proteins and ferroptosis-associated lncRNAs to predict prognosis in acute myeloid leukemia patients

Bioinformatic analysis reveals lysosome-related biomarkers and molecular subtypes in preeclampsia: novel insights into the pathogenesis of preeclampsia