Frontiers in Genetics | Computational Genomics

Original Research

Published on 25 Jan 2024

Pan-cancer and single-cell analysis reveal THRAP3 as a prognostic and immunological biomarker for multiple cancer types

in Computational Genomics

Ye-Peng Wang
Chao Ma
Xue-Kun Yang
Nan Zhang
Zhi-Gang Sun

Frontiers in Genetics

doi 10.3389/fgene.2024.1277541

3,566 views
4 citations

Review

Published on 25 Jan 2024

Artificial intelligence and database for NGS-based diagnosis in rare disease

in Computational Genomics

Yee Wen Choon
Yee Fan Choon
Nurul Athirah Nasarudin
Fatma Al Jasmi
Muhamad Akmal Remli
Mohammed Hassan Alkayali
Mohd Saberi Mohamad

Frontiers in Genetics

doi 10.3389/fgene.2023.1258083

7,808 views
5 citations

Methods

Published on 24 Jan 2024

RECCIPE: A new framework assessing localized cell-cell interaction on gene expression in multicellular ST data

in Computational Genomics

Weiping Ma
Xiaoyu Song
Guo-Cheng Yuan
Pei Wang

Frontiers in Genetics

doi 10.3389/fgene.2024.1322886

1,650 views
1 citation

Original Research

Published on 23 Jan 2024

Molecular circuit for exponentiation based on the domain coding strategy

in Computational Genomics

Chun Huang
Xiaoqiang Duan
Yifei Guo
Panlong Li
Junwei Sun
Jiaying Shao
Yanfeng Wang

Frontiers in Genetics

doi 10.3389/fgene.2023.1331951

812 views

Original Research

Published on 11 Jan 2024

Bibliometric and visual analysis of single-cell sequencing from 2010 to 2022

in Computational Genomics

Ling Chen
Yantong Wan
Tingting Yang
Qi Zhang
Yuting Zeng
Shuqi Zheng
Zhishan Ling
Yupeng Xiao
Qingyi Wan
Ruili Liu

Frontiers in Genetics

doi 10.3389/fgene.2023.1285599

3,131 views
5 citations

Original Research

Published on 11 Jan 2024

Empirical validation of ProteinMPNN’s efficiency in enhancing protein fitness

in Computational Genomics

Tianshu Wang
Xiaocheng Jin
Xiaoli Lu
Xiaoping Min
Shengxiang Ge
Shaowei Li

Frontiers in Genetics

doi 10.3389/fgene.2023.1347667

4,643 views
3 citations

Original Research

Published on 08 Jan 2024

Natural and artificial selection of multiple alleles revealed through genomic analyses

in Computational Genomics

Jana Biová
Ivana Kaňovská
Yen On Chan
Manish Sridhar Immadi
Trupti Joshi
Kristin Bilyeu
Mária Škrabišová

Frontiers in Genetics

doi 10.3389/fgene.2023.1320652

3,238 views
6 citations

Data Report

Published on 11 Dec 2023

Whole genome sequence of a long-legged fly Condylostylus longicornis from Hawaiʻi

in Computational Genomics

Bogdan Sieriebriennikov
Megan L. Porter
Jakub Mlejnek
Keith Short
Fleur Lebhardt
Isabel Holguera
Claude Desplan
Michael W. Perry

Frontiers in Genetics

doi 10.3389/fgene.2023.1325213

1,894 views

Original Research

Published on 06 Dec 2023

netMUG: a novel network-guided multi-view clustering workflow for dissecting genetic and facial heterogeneity

in Computational Genomics

Zuqi Li
Federico Melograna
Hanne Hoskens
Diane Duroux
Mary L. Marazita
Susan Walsh
Seth M. Weinberg
Mark D. Shriver
Bertram Müller-Myhsok
Peter Claes

Frontiers in Genetics

doi 10.3389/fgene.2023.1286800

2,609 views
2 citations

Editorial

Published on 29 Nov 2023

Editorial: Computational mechanism of genetic/evolutionary operator and optimizations in genomic data applications

in Computational Genomics

Jianing Xi
Zhenhua Yu
Wen Shi

Frontiers in Genetics

doi 10.3389/fgene.2023.1343199

1,330 views

Original Research

Published on 28 Nov 2023

Deep computational phenotyping of genomic variants impacting the SET domain of KMT2C reveal molecular mechanisms for their dysfunction

in Computational Genomics

Salomão Dória Jorge
Young-In Chi
Jose Lizarraga Mazaba
Neshatul Haque
Jessica Wagenknecht
Brian C. Smith
Brian F. Volkman
Angela J. Mathison
Gwen Lomberk
Michael T. Zimmermann

Frontiers in Genetics

doi 10.3389/fgene.2023.1291307

2,753 views
4 citations

Editorial

Published on 28 Nov 2023

Editorial: Using physical & genomics markers for smart therapy via expert systems with computer learning

in Computational Genomics

Yen-Wei Chu
Chi-Chang Chang

Frontiers in Genetics

doi 10.3389/fgene.2023.1336399

985 views

Original Research

Published on 27 Nov 2023

Machine learning-based integrated identification of predictive combined diagnostic biomarkers for endometriosis

in Computational Genomics

Haolong Zhang
Haoling Zhang
Huadi Yang
Ahmad Naqib Shuid
Doblin Sandai
Xingbei Chen

Frontiers in Genetics

doi 10.3389/fgene.2023.1290036

4,084 views
3 citations

Original Research

Published on 24 Nov 2023

Machine learning identified MDK score has prognostic value for idiopathic pulmonary fibrosis based on integrated bulk and single cell expression data

in Computational Genomics

Shichen Zhang
Lanlan Zhang
Lu Wang
Hongqiu Wang
Jiaxin Wu
Haoyang Cai
Chunheng Mo
Jian Yang

Frontiers in Genetics

doi 10.3389/fgene.2023.1246983

3,289 views
9 citations

Original Research

Published on 24 Nov 2023

Assessment of the progression of kidney renal clear cell carcinoma using transcriptional profiles revealed new cancer subtypes with variable prognosis

in Computational Genomics

Michelle Livesey
Nasr Eshibona
Hocine Bendou

Frontiers in Genetics

doi 10.3389/fgene.2023.1291043

1,611 views
1 citation

Original Research

Published on 17 Nov 2023

Development of novel parameters for pathogen identification in clinical metagenomic next-generation sequencing

in Computational Genomics

Xiwen Jiang
Jinghai Yan
Hao Huang
Lu Ai
Xuegao Yu
Pengqiang Zhong
Yili Chen
Zhikun Liang
Wancen Qiu
Huiying Huang

Frontiers in Genetics

doi 10.3389/fgene.2023.1266990

2,383 views
1 citation

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Articles

Pan-cancer and single-cell analysis reveal THRAP3 as a prognostic and immunological biomarker for multiple cancer types

Artificial intelligence and database for NGS-based diagnosis in rare disease

RECCIPE: A new framework assessing localized cell-cell interaction on gene expression in multicellular ST data

Molecular circuit for exponentiation based on the domain coding strategy

Bibliometric and visual analysis of single-cell sequencing from 2010 to 2022

Empirical validation of ProteinMPNN’s efficiency in enhancing protein fitness

Natural and artificial selection of multiple alleles revealed through genomic analyses

Whole genome sequence of a long-legged fly Condylostylus longicornis from Hawaiʻi

netMUG: a novel network-guided multi-view clustering workflow for dissecting genetic and facial heterogeneity

Editorial: Computational mechanism of genetic/evolutionary operator and optimizations in genomic data applications

Deep computational phenotyping of genomic variants impacting the SET domain of KMT2C reveal molecular mechanisms for their dysfunction

Editorial: Using physical & genomics markers for smart therapy via expert systems with computer learning

Machine learning-based integrated identification of predictive combined diagnostic biomarkers for endometriosis

Machine learning identified MDK score has prognostic value for idiopathic pulmonary fibrosis based on integrated bulk and single cell expression data

Assessment of the progression of kidney renal clear cell carcinoma using transcriptional profiles revealed new cancer subtypes with variable prognosis

Development of novel parameters for pathogen identification in clinical metagenomic next-generation sequencing