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ORIGINAL RESEARCH article
Front. Cell. Infect. Microbiol.
Sec. Clinical Microbiology
Volume 14 - 2024 |
doi: 10.3389/fcimb.2024.1446339
This article is part of the Research Topic Research Advances toward One Health in Brucellosis View all 5 articles
Analysis and Validation of Serum Biomarkers in Brucellosis Patients through Proteomics and Bioinformatics
Provisionally accepted- 1 Inner Mongolia Medical University, Hohhot, China
- 2 Clinical Laboratory Medicine Center, Inner Mongolia People's Hospital, Inner Mongolia, China
- 3 Inner Mongolia Academy of Medical Sciences, Inner Mongolia, China
This study aims to utilize proteomics, bioinformatics, and machine learning algorithms to identify diagnostic biomarkers in the serum of patients with acute and chronic brucellosis Methods: Proteomic analysis was conducted on serum samples from patients with acute and chronic brucellosis, as well as from healthy controls. Differential expression analysis was performed to identify proteins with altered expression, while Weighted Gene Co-expression Network Analysis (WGCNA) was applied to detect coexpression modules associated with clinical features of brucellosis. Machine learning algorithms were subsequently used to identify the optimal combination of diagnostic biomarkers. Finally, ELISA was employed to validate the identified proteins.Results: A total of 1,494 differentially expressed proteins were identified, revealing two co-expression modules significantly associated with the clinical characteristics of brucellosis. The Gaussian Mixture Model (GMM) algorithm identified six proteins that were concurrently present in both the differentially expressed and co-expression modules, demonstrating promising diagnostic potential. After ELISA validation, five proteins were ultimately selected.Discussion: These five proteins are implicated in the innate immune processes of brucellosis, potentially associated with its pathogenic mechanisms and chronicity.Furthermore, we highlighted their potential as diagnostic biomarkers for brucellosis.This study further enhances our understanding of brucellosis at the protein level, paving the way for future research endeavors.
Keywords: Brucellosis, biomarkers, Proteomics, bioinformatics, differential expression analysis, weighted gene co-expression network analysis (WGCNA), machine learning
Received: 14 Jun 2024; Accepted: 24 Dec 2024.
Copyright: © 2024 Li, Wang, Li, He, Shi, Wang, Li and Haitao. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
* Correspondence:
Ding Haitao, Clinical Laboratory Medicine Center, Inner Mongolia People's Hospital, Inner Mongolia, China
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