- Xiamen Hospital of Traditional Chinese Medicine, Xiamen, China
Atherosclerosis is a chronic vascular disease that poses a significant threat to human health. Common diagnostic methods mainly rely on active screening, which often misses the opportunity for early detection. To overcome this problem, this paper presents a novel medical ambient intelligence system for the early detection of atherosclerosis by leveraging clinical data from medical records. The system architecture includes clinical data extraction, transformation, normalization, feature selection, medical ambient computation, and predictive generation. However, the heterogeneity of examination items from different patients can degrade prediction performance. To enhance prediction performance, the “SEcond-order Classifier (SEC)” is proposed to undertake the medical ambient computation task. The first-order component and second-order cross-feature component are then consolidated and applied to the chosen feature matrix to learn the associations between the physical examination data, respectively. The prediction is lastly produced by aggregating the representations. Extensive experimental results reveal that the proposed method’s diagnostic prediction performance is superior to other state-of-the-art methods. Specifically, the Vitamin B12 indicator exhibits the strongest correlation with the early stage of atherosclerosis, while several known relevant biomarkers also demonstrate significant correlation in experimental data. The method proposed in this paper is a standalone tool, and its source code will be released in the future.
1 Introduction
Atherosclerosis is lipid accumulation and inflammation of the large arteries buildup, the risk pathological state of cardiovascular diseases. Cardiovascular diseases represent the major cause of mortality worldwide (Björkegren and Lusis, 2022). Atherosclerosis is a chronic vascular disease that poses a significant risk to people’s health. Early detection and active management are required to prevent its severe effects. Subclinical atherosclerosis (SA) refers to the early stage of atherosclerosis, in the aspect of clinical settings, not only signs and symptoms are subtle, but also routine examinations can not directly carry out the detection task. It makes atherosclerosis management in medicine even more challenging. Early atherosclerosis identification helps to prevent its development and lowers the risk of atherosclerosis-related diseases.
Active screening techniques are used for disease screening when a visitor requires certainspecific examinations. According to the nature of clinical atherosclerosis diagnosis, these methods are grouped into image-based, blood-testing, and biomarker-based methods. The image-based methods use images to identify the detailed statuses of vessels, such as doppler ultrasound (Latha et al., 2020), cardiac computed tomography angiography (Garg et al., 2022), and magnetic resonance angiography (Weinreich et al., 2017). These methods are chosen when the patient is clinically symptomatic or has risk factors. The blood-testing methods are the collection of blood from the vein, then analyzed in the laboratory to measure various components, such as plasma lipid levels (Graham et al., 2021) and coagulation tests (Koenen and Binder, 2020). Monitoring of atherosclerosis and its related complications is the purpose of these methods. The biomarker-based methods can quantify and examine the frequently particular chemicals or substances made by cells or tissues in response to the atherosclerotic process. Inflammatory biomarkers such as C-reactive protein, interleukin-6, and tumor necrosis factor-alpha, endothelial dysfunction markers such as endothelin-1 and intercellular adhesion molecule-1 (Martinez et al., 2020), but clinical settings have not yet seen the utilization of these techniques. However, in the clinical environment, these methods are frequently ignored by almost all outpatient visitors, which limits the ability to diagnose atherosclerosis early.
Computer-aided predictive methods are an emerging field of diagnostic research for disease. They not only provide decision support for diagnosing and predicting diseases (Wang et al., 2021; Huang et al., 2022), but also reveal potential factors and patterns related to disease (Zhang et al., 2022; Wang et al., 2022), which promote the innovation and development of medical knowledge. According to the nature of these methods, they are categorized into model-driven methods, data-driven methods and decision support systems (DSS). Model-driven methods apply the principles of biophysics and fluid dynamics of atherosclerosis to construct predictive models, which require a good understanding of the disease mechanisms and processes. For example, Bahloul et al. (2022) use fractional order methods to model the global and regional vessel apparent wall compliance, a biomarker of arterial stiffness, and then combined the model with carotid-to-femoral pulse wave velocity to obtain predictions. The limited knowledge of diseases and their intricacy make it challenging for researchers to set up parameters for the models. To address this issue, many studies use data-driven methods to predict atherosclerosis in its early stage. These methods rely on large-scale medical data to construct predictive models, without needing a deep knowledge of the disease mechanisms and processes. Various single or combined classification algorithms are employed to predict and diagnose atherosclerosis, such as support vector machine (SVM) (Fan et al., 2021), artificial neural network (ANN) (Terrada et al., 2019), K-nearest neighbors (KNN) (Cherradi et al., 2021), XGBoost (XGB) (Yu et al., 2021), decision tree (DT) (Chen et al., 2022) and random forest (RF) (Ward et al., 2020). However, these methods train models on specific biomarkers, which limits the generalization ability of the models. Moreover, the imbalance of medical diagnosis data of patients may impair their ability to capture existing patterns and associations in the data. DSS are systems that use computer technology and artificial intelligence methods to assist doctors or patients in making better medical decisions (Terrada et al., 2020). To apply the system to real clinical scenarios, DSS should not only use existing data for training and validation, but also consider adapting the system to clinical data, which is necessary.
The goal is to make an accurate early prediction of atherosclerosis risk, by leveraging data- and model-driven methods. There are two challenges: 1) the lack of this data type limits the performance of traditional machine learning methods. Traditional machine learning methods rely on large, diverse datasets to train models, but the lack of atherosclerosis-specific data makes it challenging to develop effective models. 2) the public or private available clinical examination data collections are quite different among patients. Since different patients may have different examination items, machine learning models that rely on these items may need to account for this variability.
To overcome the above two issues, this paper proposes an medical ambient intelligence system (MAIS) for the early detection of atherosclerosis. The system architecture consists of clinical record collection, data processing, model adoption, model evaluation, and decision visualization. Moreover, the SEcond-order Classifier (SEC) model is proposed to enhance the performance of the diagnosis task. The first-order component and second-order cross-feature component are then consolidated and applied to the chosen feature matrix in order to learn the associations between the physical examination data, respectively. The prediction is lastly produced by aggregating the representations.
The main contributions are summarized below:
1) The MAIS is proposed to predict early atherosclerosis using clinical data in medical records. The system covers the whole process of clinical application, including data processing, model adoption and system output.
2) The SEC is proposed to learn representations from sparse examined clinical items, which is suitable for common patients.
3) Experiments on clinical datasets show that the proposed SEC model achieves the performance of six state-of-the-art methods.
4) The Vitamin B12 indicator exhibits the strongest correlation with the early stage of atherosclerosis, while several known relevant biomarkers also demonstrate a significant correlation in experimental data.
The remains of this paper are organized as follows. Section 2 graphically illustrates the proposed system and the innovated diagnosis method. Section 3 gives the experimental results and their analyses. Finally, section 4 concludes this research.
2 Materials and methodology
2.1 Materials
To build a database for early prediction of atherosclerosis, it is inefficient to collect data on each patient indiscriminately and there is a lot of redundancy. Therefore, it is crucial that we precisely identify people who have a high probability of having atherosclerosis.
Nonalcoholic fatty liver disease (NAFLD) is a common chronic liver disease. It affects approximately 25% of the world’s population and is characterized by excessive accumulation of fat in the liver (Stols-Gonçalves et al., 2019). NAFLD can cause metabolic disorders such as insulin resistance, dyslipidemia, hypertension, oxidative stress, and inflammation. These are key mechanisms in the development and progression of atherosclerosis (VanWagner, 2018). People with NAFLD have been shown to have a high probability of atherosclerosis (Cattazzo et al., 2022). They often go to the liver disease centers of various hospitals for treatment. The atherosclerosis diagnosis dataset was collected from and contributed by Xiamen Hospital of Traditional Chinese Medicine Liver Disease Center.
The inclusion criteria included: First, those who signed the informed consent form, voluntarily participated in this subject, and cooperated in the completion of relevant examinations. Second, between the ages of 18 and 65 years. Third, meet the aforementioned Western diagnostic criteria for patients with NAFLD combined with SA.
Subjects who did not fit the criteria above were eliminated. The most recent report was used if a subject has undergone more than one examination because it would be more pertinent to their present condition of health.
These records contain over 1800 patients, which range from 1 January 2018, and 30 June 2022. After data extract-transform-load, the private information of patients is filtered out, and amounting to 350 examination items are picked out. Specifically, physiological information consists of urine tests, blood tests, and biochemical tests. The system automatically generates labels, using the diagnosis of SA as the basis for early detection of atherosclerosis. Subjects are labeled into two groups: positive samples with early-stage atherosclerosis (357) and negative samples without any symptoms of the disease (1491). To prevent data imbalances due to inconsistent group sizes that can affect system performance, the system selects an equal number of cases from each group: 357.
2.2 MAIS system
The proposed system is a novel medical ambient intelligence system that aims to provide early prediction of atherosclerosis. The system uses clinical data from medical records, such as physical and biological examinations, to build an intelligent platform compatible with various examination indicators that can classify health and pathological patterns.
According to the sequence of system execution, the system mainly consists of data processing, model adoption and system output.
The system architecture of the proposed MAIS is graphically displayed in Figure 1.
2.2.1 Data processing
In order to provide executable data to the model, the system first performs data processing. The system needs data in real clinical scenarios, which can be obtained by connecting to the database of the medical system. The data of patients’ clinical routine examination items are both structured and unstructured, including patient demographics, medical history, laboratory test results, imaging reports, and other relevant clinical information.
The system automatically performs data extract, transform, load (ETL) (Manickam and Indra, 2021) processing and data recognition in the data collection stage. It uses natural language processing (NLP) (Galassi et al., 2021) techniques to extract relevant information from unstructured data, such as personal details, medical records, risk factors, symptoms, diagnoses and treatments. The system also applies named entity recognition (NER) (Li et al., 2022) and coreference resolution (CR) (Stylianou and Vlahavas, 2021) to deal with inconsistent representations in unstructured text data. For structured data, the system uses data manipulation tools to extract the necessary fields or tables from the data. Then, it transforms the extracted data into a common representation that can be used by the subsequent modules, and loads it into a centralized data repository.
In the data preprocessing stage, the diagnosis label for each patient is automatically generated in the system, using the diagnosis of subclinical atherosclerosis as the basis for early detection of atherosclerosis. The system then performs normalization, feature selection, and splits the data into training and testing sets.
2.2.2 Model adoption
As an important part of the medical ambient computation, model adoption is to select the best model for the given data and task. The system applies ten traditional machine learning models and three deep learning models for the early prediction of atherosclerosis.
The baseline methods used to evaluate the effectiveness of the SEC. Some typical machine learning methods are adopted as parts of baseline methods:
1) Support vector machine (SVM) (Dudzik et al., 2021) projects the features into high dimensionality and finds the optimal hyperplane to generate classifications.
2) Random forest (RF) (Probst and Boulesteix, 2018) builds multiple decision trees via randomly selecting features and generating classification results by tree voting.
3) Logistic regression (LG) (Shipe et al., 2019) is a type of statistical model that estimates the probability of an event occurring.
4) K-nearest neighbors (KNN) (Cherradi et al., 2021) is a non-parametric method, which uses the proximity of the k closest training examples in a data set to classify.
5) Gradient boost decision tree (GBDT) (Si et al., 2017) is an iterative decision tree algorithm that generates classifications via multiple decision trees.
6) XGBoost (XGB) (Munkhdalai et al., 2020) optimizes the loss function by fitting the annotations and the residuals.
7) Gaussian naive bayes (GNB), multinomial naive bayes (MNB) and Bernoulli naive bayes (BNB) (Dou et al., 2022) are all Bayes-based methods, and the differences between them are the likelihood estimation of features.
8) Adaboost (AdaB) (Shihua et al., 2020) adds a new weak classifier in each round until a predetermined small enough error rate is reached.
Some classical deep learning methods are adopted as parts of baseline methods as well:
9) Multilayer perceptron (MLP) (Okanoue et al., 2021) maps the features through the multi-layer hidden neural to minimize the loss function.
10) Transformer (TRMF) (Vaswani et al., 2017) is a variation of the encoder-decoder structure, which replaces the recurrent layer with the attention mechanism.
2.2.3 System output
The system output has two main components: performance evaluation and decision support. The performance evaluation measures the accuracy and reliability of the system model on various metrics. The decision support offers useful information and guidance to clinicians, such as data and results in visualization, disease pattern and correlation discovery, and personalized treatment suggestions.
2.3 SEcond-order classifier
2.3.1 Problem definition
The SA diagnosis problem can be considered a binary classification problem. Let symbol
where
2.3.2 Overview
Firstly, the inputted data are compressed into [0, 1] by the normalization layer in the proposed SEC. And it was then passed through a feature selection layer for dimension reduction. After that, the selected feature matrix is fed to the proposed SEC to connect with classification targets. Finally, a sigmoid function and a binarization function are employed on the outputs to generate classifications. The graphical illustration of the proposed SEC is plotted in Figure 2.
2.3.3 Data preprocessing
The MinMax-normalization (Singh and Singh, 2020) is employed to compress the inputted features into [0, 1]. The mathematical process of normalization is formulated as follows:
where Z is the normalized feature matrix, X is the inputted feature matrix, min (⋅) is the minimum values, and max (⋅) is the maximum values.
The feature selection (Dhal and Azad, 2021) is utilized for dimension reduction. The “ANOVA F-value” is chosen as the ranking criteria for feature selection. The mathematical process is formulated as follows:
where
2.3.4 Workflow
The proposed SEC is constituted of two parts. The first component is first-order linear regression, designed to capture associations between prediction and input features. Another part is the cross-association component, which captures the associations between features. The outputs come from the combinations of the two components.
Given an inputted feature matrix
where
The given inputted feature matrix S collaborates with a learnable hidden feature matrix Wv to calculate the second-order cross features to learn the feature associations. The mathematical processes are formulated as follows:
where
C1 and C2 are subtracted to generate hidden feature representations, and the different hidden features are summed to generate second-order outputs. The mathematical process is formulated as follows:
where
The T and R are integrated to generate model outputs. The mathematical process is formulated as follows:
where
Finally, the output matrix O is passed through a sigmoid layer and a binarization layer to generate classifications. The mathematical process can be formulated as follows:
where
2.4 Performance criteria
The accuracy, precision, recall, and F1 are chosen as the metrics for assessing the effectiveness of the proposed SEC and baseline methods. The mathematical formulation of these methods and corresponding formulations are listed in Table 1 and Table 2:
2.5 Model configurations
Data processed in the same way is fed to different models to ensure a fair and unbiased comparison between them. The data are all compressed into [0, 1] using the MinMax normalization technique. The ANOVA F-value is used as the ranking criterion for feature selection, and the best L features are selected according to their F-value. The 80% data is utilized for training the models, and the remains are used to test the trained models. The five-fold cross-validation strategy is employed to validate the performance of baseline methods and the proposed SEC. The “Adam” is chosen as the optimizer for all neural models. The batch size is set to 32, and the learning rate is set to 0.01. The “binary cross entropy loss with logits” (BCELosswithLogits) is selected as the loss function. For the ensemble learning-based methods, the number of base estimators is set to 200.
3 Results and discussion
3.1 Performance comparison
Extensive experiments are carried out to examine the effectiveness of the suggested SEC. For all models, the constant parameters are set to be the same, and the other parameter is well-tuned. The experimental results are plotted in Figure 3.
Here is a summary of some findings from the experiments:
1) The proposed SEC outperforms the baseline methods.
2) Among baseline approaches, the Bayes-based methods produce the worst results.
3) SVM outperforms other machine learning techniques in terms of performance.
4) When compared to machine learning methods, deep learning techniques offer tremendous advances.
The Bayes-based methods achieve worse performance. A possible reason is that these methods decide a specific joint probability distribution. However, due to some effects, such as missing value or sparsity, the distribution of the inputted features does not follow the Gaussian or Bernoulli distribution.
The SVM obtains the highest mean average values of Accuray, Recall, and F1. Moreover, it obtains a smaller interquartile range compared with other machine learning methods. A possible reason is that this method gets the final classification via a few support vectors. It is beneficial for the model to learn key associations from inputted features.
The deep learning methods outperform machine learning methods. The multilayer perceptron (MLP) and transformer (TRMF) have higher average values of ACC, P, R, and F1. Moreover, they have a smaller interquartile range compared with machine learning methods. It demonstrates that these methods have robust performance. A significant reason is that machine learning methods usually get classification via a few key features or representations. However, these may ignore some beneficial effects of some features.
The proposed SEC has significant improvements compared with the baseline methods. Compared with the optimal performance of baseline methods, the ACC, Precision, Recall, and F1 value is increased by 7.12%, 7.12%, 0.81%, 8.74% at least, respectively. Moreover, the SEC has the smallest interquartile range among all comparable methods, which shows the robustness of the proposed method.
3.2 Parameter sensitiveness
To investigate how these features affect the classification performance, the proposed SEC are measured by ACC, Precision, Recall, and F1 by varying the number of selected features. There is an extensive range of feature numbers. To avoid searching for all situations, the coarse-tune and fine-tune are combined to search for the optimal L. Technically, the parameter first adds 10 features per varying until the model shows a noticeable decrease. And then, the parameter adds one feature per varying until the optimal performance is found. The experimental results are plotted in Figure 4. And the selected features are listed in Table 3.
FIGURE 4. The performance of the proposed SEC with varying the feature number N in terms of ACC, Precision, Recall, and F1.
Some observations from the experimental results are summarized as follows:
1) Vitamin B12 is the most correlated with SA.
2) Several conventional related biomarkers show strong correlations in the experiments.
3) Some pathogen-related metrics show associations with SA.
4) Some NAFLD-related metrics exhibit correlations with SA.
Vitamin B12 correlates significantly with the SA. Besides, several studies have reported that vitamin B can alleviate the burden of the SA (Hodis et al., 2009) It implies that vitamin B may be a criterion for the SA diagnosis within NAFLD patients.
Some established metrics have been identified, including thrombus-related biomarkers and markers of platelet reactivity. However, as shown in Figure 4, the model cannot achieve optimal performance solely using these metrics. It demonstrates that these metrics can not wholly represent the effects of SA. Biomarkers for viral hepatitis and measures for HIV are two examples of pathogen-related metrics that have a good correlation with model performance. There are two potential reasons: First, the patients infected with these infectious diseases may have a higher risk of suffering from SA. For example, the incidence of coronary plaque in people infected with HIV is 2–3 times higher than in healthy people (Boldeanu et al., 2021). On the other hand, a possible reason is the collected dataset. SA commonly has no significant symptoms. Some patients may be diagnosed with atherosclerosis incidentally due to infectious diseases.
Several glucose-tolerance-test metrics have been selected, such as half-hour, 1-h, and 2-h blood glucose. It demonstrates that the anomaly of these factors would bring a higher risk for SA. These factors are also risky for the NAFLD. The balance of lipid-glucose metabolism may be destroyed by NAFLD, which increases the risk of SA. This experiment might support this assertion further.
3.3 N-order analyses
They are solely employed for the classification task to study how each order affects performance. The experimental results are shown in Table 4.
As shown in Table 4, solely using one of the components cannot achieve the optimal prediction performance. These two components obtain similar prediction accuracy. The first-order linear regression is mainly employed to learn the associations between inputted features and the prediction targets. And the second-order cross-feature component is mainly utilized to learn the associations between inputted features. The combination of the two-component has a significant increase in prediction accuracy. Compared with the optimal performance of component, the ACC, Precision, Recall and F1 values are increased by 8.98%, 5.68%, 10.95% and 8.32%, respectively. It shows that the full SEC can learn the correlations between inputted features and prediction targets well.
4 Conclusion
This paper proposed the MAIS for the early prediction of atherosclerosis disease. This system supports the early screening and discovery of outpatients in the real environment. Moreover, the SEC model is proposed to enhance the prediction performance of atherosclerosis diagnosis under the heterogeneity of clinical data. The proposed combination of first-order components and second-order cross-feature components learns effective associations and representations from sparsely examined clinical items.
Extensive experiments are conducted on real atherosclerosis check item datasets to explore the effectiveness of the proposed method. Compared with baseline, ACC, Precision, Recall, and F1 values increased by at least 7.12%, 7.12%, 0.81%, 8.74%, respectively. Furthermore, each order in SEC is divided to perform the classification tasks independently. The results demonstrate that the full SEC is capable of learning the relationships between input features and prediction targets, and when compared to the component’s optimal performance, the ACC, Precision, Recall, and F1 values all show increases of 8.98%, 5.68%, 10.95%, and 8.32%, respectively. In addition, the experimental analysis showed that the Vitamin B12 indicator exhibits the strongest correlation with the early stage of atherosclerosis, while several known relevant biomarkers also demonstrate a significant correlation in experimental data.
There are several directions for future work. First, the validation data utilized in this study are somewhat constrained. Our intended strategy involves gathering a more diverse array of data spanning various geographical regions and demographic profiles. This could significantly enhance the universal applicability of the system and improve its generalizability to disparate demographics and locales. Second, we aspire to elucidate the relevance of exogenous features by incorporating efficacious feature selection and fusion methodologies. This approach might strengthen interpretability during the process of feature learning. Third, the purview of the system should extend beyond atherosclerosis, encompassing additional diseases. Concurrently, there is a need to investigate how medical environmental intelligence can be systematically exploited to predict and diagnose various diseases.
Data availability statement
The data analyzed in this study is subject to the following licenses/restrictions: The data used to support the findings of this study are available from the corresponding authors upon request. Requests to access these datasets should be directed to eXdlbjk5MDEyQGdtYWlsLmNvbQ==.
Author contributions
WY contributed to the experimental paradigm design and wrote the manuscript. QN, YS, and DZ helped collect data. JT and MW were responsible for the entire study, including study concepts and design. All authors contributed to the article and approved the submitted version.
Funding
This work was supported in part by the Natural Science Foundation of China (No. 82074508), the Xiamen Science and Technology Planning Project (No. 3502Z20199133).
Acknowledgments
We sincerely thank the editor and the reviewers for their insightful comments and helpful suggestions that significantly improved the paper.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Publisher’s note
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
Supplementary material
The Supplementary Material for this article can be found online at:https://www.frontiersin.org/articles/10.3389/fphys.2023.1225636/full#supplementary-material
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Keywords: atherosclerosis diagnosis, early prediction, clinical data, medical ambient intelligence, incomplete examination item
Citation: Yang W, Nie Q, Sun Y, Zou D, Tang J and Wang M (2023) Early prediction of atherosclerosis diagnosis with medical ambient intelligence. Front. Physiol. 14:1225636. doi: 10.3389/fphys.2023.1225636
Received: 29 May 2023; Accepted: 30 June 2023;
Published: 20 July 2023.
Edited by:
Christian Baumgartner, Graz University of Technology, AustriaReviewed by:
Peng Zhao, Liberty Mutual Insurance, United StatesChang Won Jeong, Wonkwang University, Republic of Korea
Copyright © 2023 Yang, Nie, Sun, Zou, Tang and Wang. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Jinmo Tang, a2luZy5tLnRAMTYzLmNvbQ==; Min Wang, d2FuZ21pbjgxQHNpbmEuY24=