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ORIGINAL RESEARCH article

Front. Microbiol.
Sec. Microbe and Virus Interactions with Plants
Volume 15 - 2024 | doi: 10.3389/fmicb.2024.1501057
This article is part of the Research Topic Plant Microbiome: Interactions, Mechanisms of Action, and Applications, Volume III View all 19 articles

High-throughput sequencing explores the genetic variability of endophytic bacteria in three Sichuan bamboo species (Phyllostachys edulis, Bambusa rigida, and Pleioblastus amarus)

Provisionally accepted
Kuan Yan Kuan Yan 1Xinyi Li Xinyi Li 1Yu Cai Yu Cai 1Lin Na Lin Na 1Qin Wei Qin Wei 1Xianming Zhao Xianming Zhao 1Salma A Soaud Salma A Soaud 2Amr M Atif Amr M Atif 2Mohamed A Abd Elhamid Mohamed A Abd Elhamid 2Rania M Y Heakel Rania M Y Heakel 2Ahmed H. El-Sappah Ahmed H. El-Sappah 1,2*
  • 1 Yibin University, Yibin, Sichuan, China
  • 2 Faculty of Agriculture, Zagazig University, Zagazig, Egypt

The final, formatted version of the article will be published soon.

    Bamboo is a sustainable and degradable resource for sustenance, high-strength cellulose microfibers, and synthetic fiber in China. Endophytic bacteria enhance root development and ethylene levels, benefiting the host plants' physiology. We investigated the populations, diversity, and abundance of endophytic bacteria in the leaves of three bamboo species-Phyllostachys edulis, Bambusa rigida, and Pleioblastus amarus-using high-throughput 16S rDNA sequencing. One thousand one hundred fifty-nine operational taxonomic units (OTUs) were obtained and further classified into 26 phyla, 64 classes, 158 orders, 270 families, 521 genera, and 811 species. The phyla with the highest abundance were Proteobacteria, Actinobacteria, and Myxococcota, and the highest genera included 1174-901-12, Sphingomonas, and unclassified_f__Enterobacteriaceae. The Genetic Diversity of Uncultured Plant-Associated Bacteria 2 relative richness of endophytic bacteria in the three species was B. rigida > P. amarus > P. edulis. The PIC-RUSt functional richness analysis of endophytic bacteria indicated their involvement in six biological pathways, including "Cellular Processes," "Environmental Information Processing," "Genetic Information Processing," "Human Diseases," "Metabolism," and "Organic Systems." Among the 41 sub-functions, the most common were "Amino Acid Metabolism," "Carbohydrate Metabolism," "Cell Motility," "Cellular Signaling," "Energy Metabolism," and "Membrane Transport." Our results provide precise knowledge for better managing bamboo forests and pave the way for isolating secondary metabolites and potential bioactive compounds.

    Keywords: Bamboo, Phyllostachys edulis, Bambusa rigida, Pleioblastus amarus, endophytic bacteria, 16s rDNA sequencing

    Received: 01 Oct 2024; Accepted: 23 Dec 2024.

    Copyright: © 2024 Yan, Li, Cai, Na, Wei, Zhao, Soaud, Atif, Elhamid, Heakel and El-Sappah. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Ahmed H. El-Sappah, Faculty of Agriculture, Zagazig University, Zagazig, Egypt

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