About this Research Topic
Recent advancements in sequencing and assembly techniques have revolutionized our understanding of plant genomes, propelling us toward achieving telomere-to-telomere (T2T) completeness. This level of assembly provides a comprehensive view of the chromosomes and captures previously elusive genetic details, allowing for unparalleled insights into gene function, genome structure, genetic diversity, and plant evolution. These breakthroughs also hold tremendous potential for the harnessing and conservation of plant germplasm resources and promoting plant biodiversity.
This Research Topic focuses on employing advanced sequencing and assembly technologies to construct T2T genomes and explore the vast potential of plant germplasm resources. Our goal is to foster research advancements that achieve high-continuity genome assemblies and extensive annotations, thereby elucidating the genetic mechanisms underpinning plant adaptability and diversity, which are crucial for enhancing agricultural practices and preserving plant germplasm resources. Additionally, we encourage studies on the roles and dynamics of transposable elements in genome function, their intricate interplay with genome architecture, and their contribution to the genetic robustness necessary for plant genome evolution.
We welcome submissions of Original Research, Methods, Review, Mini Review, Perspective and other article types accepted in Frontiers in Plant Science. Subthemes include the following but are not limited to:
• High-Quality Assembly and Meticulous Annotation of T2T Genomes: Highlighting the utilization of advanced sequencing technologies and bioinformatics methods for full-length, high-continuity assembly, and precise annotation of genomes in plant germplasm resources.
• Evolution of Transposable Elements in Germplasm Resources: Exploring the role of transposable elements in shaping genome structure, their contribution to species adaptability and evolution, and their dynamics within germplasm resources.
• Applications of T2T Genomic Data in Species Conservation and Utilization: Investigating how T2T genomic insights can enhance our understanding of genetic diversity, guide conservation efforts, and foster advancements in agricultural biotechnology.
• Germplasm Identification and Evaluation Based on T2T Genomics: Unveiling the value and potential of germplasm resources through the utilization of comprehensive genomic information, especially in the realms of conventional and molecular breeding.
This Research Topic focuses on employing advanced sequencing and assembly technologies to construct T2T genomes and explore the vast potential of plant germplasm resources. Our goal is to foster research advancements that achieve high-continuity genome assemblies and extensive annotations, thereby elucidating the genetic mechanisms underpinning plant adaptability and diversity, which are crucial for enhancing agricultural practices and preserving plant germplasm resources. Additionally, we encourage studies on the roles and dynamics of transposable elements in genome function, their intricate interplay with genome architecture, and their contribution to the genetic robustness necessary for plant genome evolution.
We welcome submissions of Original Research, Methods, Review, Mini Review, Perspective and other article types accepted in Frontiers in Plant Science. Subthemes include the following but are not limited to:
• High-Quality Assembly and Meticulous Annotation of T2T Genomes: Highlighting the utilization of advanced sequencing technologies and bioinformatics methods for full-length, high-continuity assembly, and precise annotation of genomes in plant germplasm resources.
• Evolution of Transposable Elements in Germplasm Resources: Exploring the role of transposable elements in shaping genome structure, their contribution to species adaptability and evolution, and their dynamics within germplasm resources.
• Applications of T2T Genomic Data in Species Conservation and Utilization: Investigating how T2T genomic insights can enhance our understanding of genetic diversity, guide conservation efforts, and foster advancements in agricultural biotechnology.
• Germplasm Identification and Evaluation Based on T2T Genomics: Unveiling the value and potential of germplasm resources through the utilization of comprehensive genomic information, especially in the realms of conventional and molecular breeding.
Keywords: Genome assembly, Telomere-to-telomere, Hi-C, Transposable elements, Germplasm resources
Important Note: All contributions to this Research Topic must be within the scope of the section and journal to which they are submitted, as defined in their mission statements. Frontiers reserves the right to guide an out-of-scope manuscript to a more suitable section or journal at any stage of peer review.
