Women in Molecular Mechanisms of Aging Research

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Establishment of the age marker-based panel in human fibroblasts of young, mid-age and old donors. (A) Cell Model. For initial experiments, fibroblasts with different donor age was used. (B) Replicative potential of human fibroblasts. Cells were cultured under stable conditions (37°C, 5% CO2) in DMEM medium (with 15% FBS, 1% Pen-Strep). PDL was observed for max. 150 days. Fibroblasts from young (Young 1–5) and mid-age (Midage 1–3) donors display healthy growth. In contrast, fibroblasts from old donors (Old 3, Old 4, Old 5 and 6) showed slower growth except for Old 1 and Old 2. (C–K) X̅ = Mean value of all young donor fibroblasts. (C) Amount of γH2A.X foci per cell examined by IF staining to investigate DSBs in human fibroblasts. Cells of very old individuals (Old 4 and 5) displayed an increase in γH2A.X foci in comparison to the mean of all young donors. Mid-age and old (Old 1, Old 2, Old 3 and Old 6) donor fibroblast showed no DSBs. [n = 3–4 (each n tested >15 cells), mean ± SEM,*p < 0.05, **p < 0,001, ***p < 0.0001, one-way ANOVA] (D) CTCF of H3K9Me3 in human fibroblasts. Donor fibroblasts from old individuals (Old 2, Old 4, Old 5 and Old 6) displayed a decrease in CTCF of H3K9Me3 compared to the mean of young donors. There were no changes in CTCF of H3K9Me3 in mid-age cells (Midage 1–3). [n = 3–4 (each n tested >15 cells), mean ± SEM, *p < 0.05, **p < 0.001, ***p < 0.0001, one-way ANOVA] (E) Telomere length was measured by MM-qPCR in comparison to a standard of healthy mixed aged individuals. In comparison to grouped young donor cells, Old 6 displayed a shortening of telomere length. [n = 3, mean ± SEM, *p < 0.05, **p < 0.001, ***p < 0.0001, one-way ANOVA] (G) RNA expression levels measured by qRT-PCR of p21 and p16 was examined to investigate activation of cell cycle arrest. Old 4 and Old 5 displayed an increase in RNA expression level of p21. All other cells did not show altered RNA expression levels. [n = 3-4, mean ± SEM *p < 0.05, **p < 0.001, ***p < 0.0001, one-way ANOVA] (F) Quantification of SA-βGAL positive cells by X-Gal staining. In comparison to grouped young donor cells, Midage 3 and all old human fibroblasts (Old 1–6) displayed a significant increase of SA- βGAL positive cells. [n = 3–4 (each n tested >15 cells), mean ± SEM, *p < 0,05, **p < 0.001, ***p < 0.0001, one-way ANOVA] (H) CTCF of Lamin B1 expression. A significant decrease in Lamin B1 expression could be observed in mid-age (Midage 1 and Midage 3) and old (Old 1–5) cells compared to the mean of young donor fibroblasts. [n = 4 (each n tested >15 cells), mean ± SEM, *p < 0.05, **p < 0.001, ***p < 0.0001, one-way ANOVA] (I, J) Determination of cytokine secretion (IL-6, IL-8) in conditioned medium by ELISA. In comparison to grouped young donor cells, old donor fibroblasts (Old 1, Old2, Old 3, Old 4, and Old 6) showed an increase in levels of IL-6. An increase in concentration with respect to IL-8 could be observed in Midage 1 and Old 4 in comparison to grouped controls. [n = 3-4, mean ± SEM, *p < 0.05, **p < 0,001, ***p < 0.0001, one-way ANOVA] (K) Change in nucleus morphology shown as nucleus area (pixel units) in human fibroblast. Nucleus area is significantly increased in very old donor fibroblasts (Old 4 and 5) compared with grouped young controls. [n = 6–8 (each n tested >15 cells), mean ± SEM *p < 0.05, **p < 0.001, ***p < 0.0001, one-way ANOVA].
Original Research
15 February 2023
Systematic estimation of biological age of in vitro cell culture systems by an age-associated marker panel
Christiane Hartmann
5 more and 
Andreas Hermann

Aging is a process that affects almost all multicellular organisms and since our population ages with increasing prevalence of age-related diseases, it is important to study basic processes involved in aging. Many studies have been published so far using different and often single age markers to estimate the biological age of organisms or different cell culture systems. However, comparability of studies is often hampered by the lack of a uniform panel of age markers. Consequently, we here suggest an easy-to-use biomarker-based panel of classical age markers to estimate the biological age of cell culture systems that can be used in standard cell culture laboratories. This panel is shown to be sensitive in a variety of aging conditions. We used primary human skin fibroblasts of different donor ages and additionally induced either replicative senescence or artificial aging by progerin overexpression. Using this panel, highest biological age was found for artificial aging by progerin overexpression. Our data display that aging varies depending on cell line and aging model and even from individual to individual showing the need for comprehensive analyses.

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Methods
29 August 2022

Organisms undergo a variety of characteristic changes as they age, suggesting a substantial commonality in the mechanistic basis of aging. Experiments in model organisms have revealed a variety of cellular systems that impact lifespan, but technical challenges have prevented a comprehensive evaluation of how these components impact the trajectory of aging, and many components likely remain undiscovered. To facilitate the deeper exploration of aging trajectories at a sufficient scale to enable primary screening, we have created the Caenorhabditis elegans Observatory, an automated system for monitoring the behavior of group-housed C. elegans throughout their lifespans. One Observatory consists of a set of computers running custom software to control an incubator containing custom imaging and motion-control hardware. In its standard configuration, the Observatory cycles through trays of standard 6 cm plates, running four assays per day on up to 576 plates per incubator. High-speed image processing captures a range of behavioral metrics, including movement speed and stimulus-induced turning, and a data processing pipeline continuously computes summary statistics. The Observatory software includes a web interface that allows the user to input metadata and view graphs of the trajectory of behavioral aging as the experiment unfolds. Compared to the manual use of a plate-based C. elegans tracker, the Observatory reduces the effort required by close to two orders of magnitude. Within the Observatory, reducing the function of known lifespan genes with RNA interference (RNAi) gives the expected phenotypic changes, including extended motility in daf-2(RNAi) and progeria in hsf-1(RNAi). Lifespans scored manually from worms raised in conventional conditions match those scored from images captured by the Observatory. We have used the Observatory for a small candidate-gene screen and identified an extended youthful vigor phenotype for tank-1(RNAi) and a progeric phenotype for cdc-42(RNAi). By utilizing the Observatory, it is now feasible to conduct whole-genome screens for an aging-trajectory phenotype, thus greatly increasing our ability to discover and analyze new components of the aging program.

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Frontiers in Aging

The Role of Stem Cells in Tissue Regeneration and Aging
Edited by Jaba Tkemaladze, Mariam Kipshidze, David Aphkhazava
Deadline
31 May 2025
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