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Original Research
16 November 2022
Expansion of the mutation spectrum and phenotype of USP7-related neurodevelopmental disorder
Hong Zheng
9 more and 
Hongyan Liu
(A) A report on the distribution of USP7 gene variants and protein domain pattern map in history. Variations in red font indicate loci discovered. (B) The conservation analysis of USP7 amino acid sequence in multiple species on missense variants (p.Leu279Val and p.Tyr331Cys). (C) The panoramic 3D map of wild-type USP7 protein. Although the p.Tyr331Cys (one hydrogen bond with Gly392) (D,E) and p.Leu279Val (three hydrogen bonds with Thr276, Ser282, and Phe283) (F,G) and wild-type and mutant hydrogen bonds did not change, interaction between the benzene ring of TYR331 and neighboring atoms, interaction between LEU279 and neighboring atoms, the amino acid side chain following mutation changed. Interactions between atoms within 4A are represented in dashed pink, and hydrogen bonds in blue dotted lines, the red and blue dots represent water molecules; (H) bar graph showing the distribution of the relevant clinical features among all the subjects (20) identified as having USP7 variants. The y-axis shows the number of patients. (I) A pie chart showing the percentage distribution of USP7 variants. (J) A pie chart showing the proportion of USP7 variants in the different functional domains.

Background: Hao-fountain syndrome (HAFOUS) is a neurodevelopmental syndrome characterized by global developmental and severe language delays, behavioral abnormalities (including autism), and mild dysmorphic impairment of intellectual development. It is a dominant genetic disease caused by USP7 gene (*602519) mutations on chromosome 16p13.2. So far, only 15 cases with 14 deleterious variants in the USP7 gene have been reported.

Materials and methods: This study describes three unrelated patients with USP7 variants. Besides, we identified novel de novo heterozygous USP7 variants using trio-whole exome sequencing and verified by Sanger sequencing. Furthermore, clinical characteristics were evaluated by reviewing the medical records.

Results: The three identified variants, i.e., one frameshift variant (c.247_250del, p.Glu83Argfs × 18) and two missense variants (c.992A > G, p.Tyr331Cys; c.835T > G, p.Leu279Val) are unreported. The predominant clinical manifestations of the three patients included: DD/ID; language impairment; abnormal behavior; abnormal brain magnetic resonance (dilation of lateral ventricles, dilation of Virchow-Robin spaces, dilated the third ventricle, abnormal cerebral white matter morphology in bilateral occipital lobes, hypodysplasia of the corpus callosum, arachnoid cyst, delayed myelination, and widened subarachnoid space); some also had facial abnormalities.

Conclusion: In summary, DD/ID is the most prevalent clinical phenotype of HAFOUS, although some patients also exhibit language and behavioral abnormalities. For the first time in China, we identified three variants of the USP7 gene using whole-genome sequence data. This work expands the USP7 gene mutation spectrum and provides additional clinical data on the clinical phenotype of HAFOUS.

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Review
28 June 2021
The tweety Gene Family: From Embryo to Disease
Rithvik R. Nalamalapu
3 more and 
Margaret S. Saha
Tree diagram depicting the Tweety protein homologs identified across multiple lineages based on phylogenetic analyses by past literature. The positions of potential orthologs identified by OrthoDB are assumed based on a revised eukaryotic tree incorporating multiple phylogenomic studies, while the positions of potential amphioxus and tunicate Tweety homologs identified through BLAST searches are assumed based on the current understanding of chordate evolution (Donoghue, 2017; Kriventseva et al., 2019; Burki et al., 2020). These have been labeled with a “(?)” in front of the species name. Multiple duplication events lead to the three Tweety paralogs found in most vertebrate species, while other eukaryotes have varying numbers of homologs (Campbell et al., 2000; Matthews et al., 2007; Han et al., 2019). The diagram does not attempt any phylogenetic analyses between the homologs and is only a summary of the findings by past literature and potential homologs identified through database searches. Protein accession numbers not included in the diagram are given in the Supplementary Material (Supplementary Accession Numbers; NCBI Resource Coordinators, 2018; https://www.ncbi.nlm.nih.gov/protein).

The tweety genes encode gated chloride channels that are found in animals, plants, and even simple eukaryotes, signifying their deep evolutionary origin. In vertebrates, the tweety gene family is highly conserved and consists of three members—ttyh1, ttyh2, and ttyh3—that are important for the regulation of cell volume. While research has elucidated potential physiological functions of ttyh1 in neural stem cell maintenance, proliferation, and filopodia formation during neural development, the roles of ttyh2 and ttyh3 are less characterized, though their expression patterns during embryonic and fetal development suggest potential roles in the development of a wide range of tissues including a role in the immune system in response to pathogen-associated molecules. Additionally, members of the tweety gene family have been implicated in various pathologies including cancers, particularly pediatric brain tumors, and neurodegenerative diseases such as Alzheimer’s and Parkinson’s disease. Here, we review the current state of research using information from published articles and open-source databases on the tweety gene family with regard to its structure, evolution, expression during development and adulthood, biochemical and cellular functions, and role in human disease. We also identify promising areas for further research to advance our understanding of this important, yet still understudied, family of genes.

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Frontiers in Neurology

Cross-Talk of Synaptic Proteins in Neurological Diseases
Edited by Rajkumar Vutukuri, Rushendhiran Kesavan, Gülcan Akgül
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