Computational Predictions, Dynamic Tracking, and Evolutionary Analysis of Antibiotic Resistance Through the Mining of Microbial Genomes and Metagenomic Data

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EDITORIAL

Published on 04 Apr 2022

Editorial: Computational Predictions, Dynamic Tracking, and Evolutionary Analysis of Antibiotic Resistance Through the Mining of Microbial Genomes and Metagenomic Data

Liang Wang
Alfred Chin Yen Tay
Jian Li
Qi Zhao

doi 10.3389/fmicb.2022.880967

1,012 views
1 citation

ORIGINAL RESEARCH

Published on 03 Feb 2022

Hi-C Metagenomics in the ICU: Exploring Clinically Relevant Features of Gut Microbiome in Chronically Critically Ill Patients

Valeriia Ivanova
Ekaterina Chernevskaya
Petr Vasiluev
Artem Ivanov
Ivan Tolstoganov
Daria Shafranskaya
Vladimir Ulyantsev
Anton Korobeynikov
Sergey V. Razin
2 more
Alexander Tyakht

doi 10.3389/fmicb.2021.770323

7,896 views
16 citations

ORIGINAL RESEARCH

Published on 03 Dec 2021

MDRSA: A Web Based-Tool for Rapid Identification of Multidrug Resistant Staphylococcus aureus Based on Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry

Chia-Ru Chung
Zhuo Wang
Jing-Mei Weng
Hsin-Yao Wang
Li-Ching Wu
Yi-Ju Tseng
Chun-Hsien Chen
Jang-Jih Lu
Jorng-Tzong Horng
Tzong-Yi Lee

doi 10.3389/fmicb.2021.766206

3,492 views
5 citations

TECHNOLOGY AND CODE

Published on 06 Oct 2021

Graph-Based Approaches Significantly Improve the Recovery of Antibiotic Resistance Genes From Complex Metagenomic Datasets

Daria Shafranskaya
Alexander Chori
Anton Korobeynikov

doi 10.3389/fmicb.2021.714836

2,070 views
8 citations

ORIGINAL RESEARCH

Published on 23 Aug 2021

Prediction of Minimal Inhibitory Concentration of Meropenem Against Klebsiella pneumoniae Using Metagenomic Data

Rundong Tan
Anqi Yu
Ziming Liu
Ziqi Liu
Rongfeng Jiang
Xiaoli Wang
Jialin Liu
Junhui Gao
Xinjun Wang

doi 10.3389/fmicb.2021.712886

4,150 views
5 citations

ORIGINAL RESEARCH

Published on 02 Aug 2021

Whole-Genome-Based Helicobacter pylori Geographic Surveillance: A Visualized and Expandable Webtool

Xiaosen Jiang
Zheng Xu
Tongda Zhang
Yuan Li
Wei Li
Hongdong Tan

doi 10.3389/fmicb.2021.687259

4,425 views
10 citations

ORIGINAL RESEARCH

Published on 23 Jul 2021

BacAnt: A Combination Annotation Server for Bacterial DNA Sequences to Identify Antibiotic Resistance Genes, Integrons, and Transposable Elements

Xiaoting Hua
Qian Liang
Min Deng
Jintao He
Meixia Wang
Wenjie Hong
Jun Wu
Bian Lu
Sebastian Leptihn
1 more
Huan Chen

doi 10.3389/fmicb.2021.649969

10,609 views
51 citations

MINI REVIEW

Published on 19 Jul 2021

Applications of Raman Spectroscopy in Bacterial Infections: Principles, Advantages, and Shortcomings

Liang Wang
Wei Liu
Jia-Wei Tang
Jun-Jiao Wang
Qing-Hua Liu
Peng-Bo Wen
Meng-Meng Wang
Ya-Cheng Pan
Bing Gu
Xiao Zhang

doi 10.3389/fmicb.2021.683580

12,108 views
69 citations

ORIGINAL RESEARCH

Published on 05 Jul 2021

Dysbiosis of Gut Microbiota in Patients With Acute Myocardial Infarction

Ying Han
Zhaowei Gong
Guizhi Sun
Jing Xu
Changlu Qi
Weiju Sun
Huijie Jiang
Peigang Cao
Hong Ju

doi 10.3389/fmicb.2021.680101

8,031 views
73 citations

METHODS

Published on 05 May 2021

HCK and ABAA: A Newly Designed Pipeline to Improve Fungi Metabarcoding Analysis

Kodjovi D. Mlaga
Alban Mathieu
Charles Joly Beauparlant
Alban Ott
Ahmad Khodr
Olivier Perin
Arnaud Droit

doi 10.3389/fmicb.2021.640693

2,846 views

METHODS

Published on 01 Apr 2021

An Inductive Logistic Matrix Factorization Model for Predicting Drug-Metabolite Association With Vicus Regularization

Yuanyuan Ma
Lifang Liu
Qianjun Chen
Yingjun Ma

doi 10.3389/fmicb.2021.650366

2,153 views
1 citation

METHODS

Published on 24 Mar 2021

Comparison of Methods for Picking the Operational Taxonomic Units From Amplicon Sequences

Ze-Gang Wei
Xiao-Dan Zhang
Ming Cao
Fei Liu
Yu Qian
Shao-Wu Zhang

doi 10.3389/fmicb.2021.644012

11,492 views
29 citations

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Articles

Editorial: Computational Predictions, Dynamic Tracking, and Evolutionary Analysis of Antibiotic Resistance Through the Mining of Microbial Genomes and Metagenomic Data

Hi-C Metagenomics in the ICU: Exploring Clinically Relevant Features of Gut Microbiome in Chronically Critically Ill Patients

MDRSA: A Web Based-Tool for Rapid Identification of Multidrug Resistant Staphylococcus aureus Based on Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry

Graph-Based Approaches Significantly Improve the Recovery of Antibiotic Resistance Genes From Complex Metagenomic Datasets

Prediction of Minimal Inhibitory Concentration of Meropenem Against Klebsiella pneumoniae Using Metagenomic Data

Whole-Genome-Based Helicobacter pylori Geographic Surveillance: A Visualized and Expandable Webtool

BacAnt: A Combination Annotation Server for Bacterial DNA Sequences to Identify Antibiotic Resistance Genes, Integrons, and Transposable Elements

Applications of Raman Spectroscopy in Bacterial Infections: Principles, Advantages, and Shortcomings

Dysbiosis of Gut Microbiota in Patients With Acute Myocardial Infarction

HCK and ABAA: A Newly Designed Pipeline to Improve Fungi Metabarcoding Analysis

An Inductive Logistic Matrix Factorization Model for Predicting Drug-Metabolite Association With Vicus Regularization

Comparison of Methods for Picking the Operational Taxonomic Units From Amplicon Sequences

Frontiers in Microbiology

Participating Journals

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