Emerging Diagnostic Approaches for Triple-Negative Breast Cancer

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Review
20 November 2020
MiRNA and LncRNA as Potential Biomarkers in Triple-Negative Breast Cancer: A Review
Simona Ruxandra Volovat
12 more and 
Iolanda Augustin
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Noncoding RNAs (ncRNAs) include a diverse range of RNA species, including microRNAs (miRNAs) and long noncoding RNAs (lncRNAs). MiRNAs, ncRNAs of approximately 19–25 nucleotides in length, are involved in gene expression regulation either via degradation or silencing of the messenger RNAs (mRNAs) and have roles in multiple biological processes, including cell proliferation, differentiation, migration, angiogenesis, and apoptosis. LncRNAs, which are longer than 200 nucleotides, comprise one of the largest and most heterogeneous RNA families. LncRNAs can activate or repress gene expression through various mechanisms, acting alone or in combination with miRNAs and other molecules as part of various pathways. Until recently, most research has focused on individual lncRNA and miRNA functions as regulators, and there is limited available data on ncRNA interactions relating to the tumor growth, metastasis, and therapy of cancer, acting either on mRNA alone or as competing endogenous RNA (ceRNA) networks. Triple-negative breast cancer (TNBC) represents approximately 10%–20% of all breast cancers (BCs) and is highly heterogenous and more aggressive than other types of BC, for which current targeted treatment options include hormonotherapy, PARP inhibitors, and immunotherapy; however, no targeted therapies for TNBC are available, partly because of a lack of predictive biomarkers. With advances in proteomics, new evidence has emerged demonstrating the implications of dysregulation of ncRNAs in TNBC etiology. Here, we review the roles of lncRNAs and miRNAs implicated in TNBC, including their interactions and regulatory networks. Our synthesis provides insight into the mechanisms involved in TNBC progression and has potential to aid the discovery of new diagnostic and therapeutic strategies.

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104 citations
Original Research
05 August 2020
Biological Landscape of Triple Negative Breast Cancers Expressing CTLA-4
María G. C. Navarrete-Bernal
15 more and 
Leticia Rocha-Zavaleta
Expression of CTLA-4, CD80/CD86 ligands, and CTLA-4-associated pathways in TNBC cell lines. Expression of CTLA-4 protein was evaluated by flow cytometry using phytohemagglutinin-L-activated human lymphocytes (PBMC) as a positive control in (A) intracellular compartment and (B) cell-surface compartment. Expression of cell-surface (C) CD80 and (D) CD86 in HCC1937 and MDA-MB-231 cells by flow cytometry, including in vitro-cultivated human peripheral blood monocytes as a positive control. (E) The expression of the CTLA-4 gene was investigated by RT-PCR in the DU4457, HCC70, HCC1937, and MDA-MB-231 cell lines. Phytohemagglutinin-L-activated human lymphocyte RNA was included as a positive control (+), and RNA from in vitro-cultured human peripheral blood monocytes as a negative control (–). Lower panel: Representation of protein expression results (F) Scatterplot showing the correlation between CTLA-4-normalized expression and ssGSEA-enriched score of immune signatures (CD4/CD8, lymphocyte infiltration) among human triple-negative tumors from public databases (N = 1,320). CTLA-4 expression was highly concordant with lymphoid infiltration and tumor purity (Spearman correlation R = 0.72; p < 0.05). Colors of each point represent tumor purity values inferred by the ESTIMATE algorithm. (G) Donut charts showing the distribution of TN tumors over-expressing CTLA-4/CD80/CD86 (mRNA level). Color shades indicate high or low CD80 or CD86.

Patients with triple-negative breast cancer (TNBC) have a poor prognosis, partly because of the absence of targeted therapies. Recognition of the key role of immune responses against cancer has allowed the advent of immunotherapy, focused on the inhibition of negative immune checkpoints, such as CTLA-4. CTLA-4 is also expressed in some cancer cells, but its activity in tumor cells is not completely understood. Thus, the aim of the present work was to determine the biological landscape and functions of CTLA-4 expressed in TNBC cells through preclinical and in silico analysis. Exploration of CTLA-4 by immunohistochemistry in 50 TNBC tumors revealed membrane and cytoplasmic expression at different intensities. Preclinical experiments, using TNBC cell lines, showed that stimulation of CTLA-4 with CD80 enhances activation of the ERK1/2 signaling pathway, while CTLA-4 blockade by Ipilimumab induces the activation of AKT and reduces cell proliferation in vitro. We then developed an analytic pipeline to define the effects of CTLA-4 in available public data that allowed us to identify four distinct tumor clusters associated with CTLA-4 activation, which are characterized by enrichment of distinctive pathways associated with cell adhesion, MAPK signaling, TGF-ß, VEGF, TNF-α, drug metabolism, ion and amino acid transport, and KRAS signaling, among others. In addition, blockade of CTLA-4 induced increased secretion of IL-2 by tumor cells, suggesting that the receptor regulates cellular functions that may impact the immune microenvironment. This is relevant because a deep characterization of immune infiltrate, conducted using public data to estimate the abundancies of immune-cell types, showed that CTLA-4-activated-like tumors present a conditional immune state similar to an escape phenotype exploited by cancer cells. Finally, by interrogating transcriptional predictors of immunotherapy response, we defined that CTLA-4 activation correlates with high immune scores related to good clinical predicted responses to anti-CTLA-4 therapy. This work sheds new light on the roles of activated CLTA-4 in the tumor compartment and suggests an important interplay between tumor CLTA-4-activated portraits and immune-infiltrating cell populations.

11,193 views
36 citations
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