Frontiers | What can long-read technology and comparative microbial genomics reveal about evolution and spreading of pathogens under the ONE Health perspective?

What can long-read technology and comparative microbial genomics reveal about evolution and spreading of pathogens under the ONE Health perspective?

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ORIGINAL RESEARCH

Published on 29 May 2020

Microevolution and Gain or Loss of Mobile Genetic Elements of Outbreak-Related Listeria monocytogenes in Food Processing Environments Identified by Whole Genome Sequencing Analysis

Helen Yang
Maria Hoffmann
Marc W. Allard
Eric W. Brown
Yi Chen

doi 10.3389/fmicb.2020.00866

5,017 views
16 citations

ORIGINAL RESEARCH

Published on 25 May 2020

Whole Genome Sequencing of Hepatitis A Virus Using a PCR-Free Single-Molecule Nanopore Sequencing Approach

Frederico M. Batista
Tina Stapleton
James A. Lowther
Vera G. Fonseca
Rebecca Shaw
Christopher Pond
David I. Walker
Ronny van Aerle
Jaime Martinez-Urtaza

doi 10.3389/fmicb.2020.00874

6,004 views
17 citations

ORIGINAL RESEARCH

Published on 08 May 2020

The Application of Nanopore Sequencing Technology to the Study of Dinoflagellates: A Proof of Concept Study for Rapid Sequence-Based Discrimination of Potentially Harmful Algae

Robert G. Hatfield
Frederico M. Batista
Timothy P. Bean
Vera G. Fonseca
Andres Santos
Andrew D. Turner
Adam Lewis
Karl J. Dean
Jaime Martinez-Urtaza

doi 10.3389/fmicb.2020.00844

8,434 views
28 citations

ORIGINAL RESEARCH

Published on 15 Apr 2020

Pathogenomes of Atypical Non-shigatoxigenic Escherichia coli NSF/SF O157:H7/NM: Comprehensive Phylogenomic Analysis Using Closed Genomes

Emmanuel C. Nyong
Sam R. Zaia
Anna Allué-Guardia
Armando L. Rodriguez
Zaina Irion-Byrd
Sara S. K. Koenig
Peter Feng
James L. Bono
Mark Eppinger

doi 10.3389/fmicb.2020.00619

3,962 views
12 citations

ORIGINAL RESEARCH

Published on 27 Mar 2020

Molecular Characteristics of Brucella Isolates Collected From Humans in Hainan Province, China

Zhenjun Li
Xu-ming Wang
Xiong Zhu
Miao Wang
Hai Cheng
Dan Li
Zhi Guo Liu

doi 10.3389/fmicb.2020.00452

7,924 views
20 citations

ORIGINAL RESEARCH

Published on 23 Mar 2020

Temporal Dynamics of Salmonella enterica subsp. enterica Serovar Agona Isolates From a Recurrent Multistate Outbreak

Maria Hoffmann
John Miller
David Melka
Marc W. Allard
Eric W. Brown
James B. Pettengill

doi 10.3389/fmicb.2020.00478

3,065 views
17 citations

ORIGINAL RESEARCH

Published on 19 Feb 2020

Closing Clostridium botulinum Group I Genomes Using a Combination of Short- and Long-Reads

Narjol Gonzalez-Escalona
Shashi K. Sharma

doi 10.3389/fmicb.2020.00239

3,873 views
10 citations

ORIGINAL RESEARCH

Published on 17 Jan 2020

mcr-Colistin Resistance Genes Mobilized by IncX4, IncHI2, and IncI2 Plasmids in Escherichia coli of Pigs and White Stork in Spain

Lourdes Migura-Garcia
Juan J. González-López
Jaime Martinez-Urtaza
J. R. Aguirre Sánchez
A. Moreno-Mingorance
A. Perez de Rozas
Ursula Höfle
Y. Ramiro
Narjol Gonzalez-Escalona

doi 10.3389/fmicb.2019.03072

8,542 views
62 citations

ORIGINAL RESEARCH

Published on 05 Dec 2019

Diverse Fluoroquinolone Resistance Plasmids From Retail Meat E. coli in the United States

Gregory H. Tyson
Cong Li
Chih-Hao Hsu
Sonya Bodeis-Jones
Patrick F. McDermott

doi 10.3389/fmicb.2019.02826

6,562 views
33 citations

ORIGINAL RESEARCH

Published on 04 Sep 2019

Completing Circular Bacterial Genomes With Assembly Complexity by Using a Sampling Strategy From a Single MinION Run With Barcoding

Yu-Chieh Liao
Hung-Wei Cheng
Han-Chieh Wu
Shu-Chen Kuo
Tsai-Ling Yang Lauderdale
Feng-Jui Chen

doi 10.3389/fmicb.2019.02068

16,656 views
27 citations

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Frontiers in Microbiology

Evolutionary and Genomic MicrobiologyOffline

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Articles

Microevolution and Gain or Loss of Mobile Genetic Elements of Outbreak-Related Listeria monocytogenes in Food Processing Environments Identified by Whole Genome Sequencing Analysis

Whole Genome Sequencing of Hepatitis A Virus Using a PCR-Free Single-Molecule Nanopore Sequencing Approach

The Application of Nanopore Sequencing Technology to the Study of Dinoflagellates: A Proof of Concept Study for Rapid Sequence-Based Discrimination of Potentially Harmful Algae

Pathogenomes of Atypical Non-shigatoxigenic Escherichia coli NSF/SF O157:H7/NM: Comprehensive Phylogenomic Analysis Using Closed Genomes

Molecular Characteristics of Brucella Isolates Collected From Humans in Hainan Province, China

Temporal Dynamics of Salmonella enterica subsp. enterica Serovar Agona Isolates From a Recurrent Multistate Outbreak

Closing Clostridium botulinum Group I Genomes Using a Combination of Short- and Long-Reads

mcr-Colistin Resistance Genes Mobilized by IncX4, IncHI2, and IncI2 Plasmids in Escherichia coli of Pigs and White Stork in Spain

Diverse Fluoroquinolone Resistance Plasmids From Retail Meat E. coli in the United States

Completing Circular Bacterial Genomes With Assembly Complexity by Using a Sampling Strategy From a Single MinION Run With Barcoding

Frontiers in Microbiology

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