ResultsIn presence of different salt levels, PG-4 showed a high potentiality to produce several plant growth promoting metabolites such as NH3, siderophore, 1-aminocyclopropane-1-carboxylic acid deaminase (ACC-deaminase), and hydrolytic enzymes. Inoculation of the PG-4 significantly enhanced plant tolerance to salt stress, as demonstrated by promotion of plant growth (shoot and root biomass) under salt stress condition. Furthermore, PG-4 improved salt tolerance of Macrotyloma uniflorum seedlings by affecting the antioxidant enzymes including peroxidase (POD) and superoxide dismutase (SOD), by increasing the levels of proline, soluble sugars and chlorophyll. Treatment with PG-4 increased the K+ content while decreased the Na+ concentration level under salt stress. Transcriptomic analysis revealed 5525 genes were differentially expressed (PG-4-inoculated versus non-inoculated samples) at 0 mM NaCl, of which 3277 were upregulated and 2248 downregulated, while 1298 genes were differentially expressed at 100 mM NaCl, of which 819 were upregulated and 479 were downregulated. GO and KEGG enrichment analyses showed that these DEGs were significantly enriched in several terms and pathways mainly involved in the regulation of the cellular redox state, cell wall modification, metabolic adjustments, hemoglobin, biosynthesis of secondary metabolites and plant hormone signal transduction.