AUTHOR=Potdar Varsha , Vijay Neetu , Mukhopadhyay Labanya , Aggarwal Neeraj , Bhardwaj Sumit Dutt , Choudhary Manohar Lal , Gupta Nivedita , Kaur Harmanmeet , Narayan Jitendra , Kumar Prabhat , Singh Harpreet , Abdulkader Rizwan Suliankatchi , Murhekar Manoj , Mishra Meena , Thangavel Sundararajan , Nagamani K. , Dhodapkar Rahul , Fomda Bashir Ahmad , Varshney Umesh , Majumdar Agniva , Dutta Shanta , Vijayachari P. , Turuk Jyotirmayee , Majumdar Tapan , Sahoo Ganesh Chandra , Pandey Krishna , Bhargava Anudita , Negi Sanjay Singh , Khatri Prabhat K. , Kalawat Usha , Biswas Debasis , Khandelwal Neeta , Borkakoty Biswajyoti , Manjushree S. , Singh Mini P. , Iravane Jyoti , Kaveri K. , Shantala G. B. , Brijwal Megha , Choudhary Aashish , Dar Lalit , Malhotra Bharti , Jain Amita , ILI-SARI Surveillance Team TITLE=Pan-India influenza-like illness (ILI) and Severe acute respiratory infection (SARI) surveillance: epidemiological, clinical and genomic analysis JOURNAL=Frontiers in Public Health VOLUME=11 YEAR=2023 URL=https://www.frontiersin.org/journals/public-health/articles/10.3389/fpubh.2023.1218292 DOI=10.3389/fpubh.2023.1218292 ISSN=2296-2565 ABSTRACT=Background

Over time, COVID-19 testing has significantly declined across the world. However, it is critical to monitor the virus through surveillance. In late 2020, WHO released interim guidance advising the use of the existing Global Influenza Surveillance and Response System (GISRS) for the integrated surveillance of influenza and SARS-CoV-2.

Methods

In July 2021, we initiated a pan-India integrated surveillance for influenza and SARS-CoV-2 through the geographically representative network of Virus Research and Diagnostic Laboratories (VRDLs) across 26 hospital and laboratory sites and 70 community sites. A total of 34,260 cases of influenza-like illness (ILI) and Severe acute respiratory infection (SARI) were enrolled from 4 July 2021 to 31 October 2022.

Findings

Influenza A(H3) and B/Victoria dominated during 2021 monsoon season while A(H1N1)pdm09 dominated during 2022 monsoon season. The SARS-CoV-2 “variants of concern” (VoC) Delta and Omicron predominated in 2021 and 2022, respectively. Increased proportion of SARI was seen in extremes of age: 90% cases in < 1 year; 68% in 1 to 5 years and 61% in ≥ 8  years age group. Approximately 40.7% of enrolled cases only partially fulfilled WHO ILI and SARI case definitions. Influenza- and SARS-CoV-2-infected comorbid patients had higher risks of hospitalization, ICU admission, and oxygen requirement.

Interpretation

The results depicted the varying strains and transmission dynamics of influenza and SARS-CoV-2 viruses over time, thus emphasizing the need to continue and expand surveillance across countries for improved decision making. The study also describes important information related to clinical outcomes of ILI and SARI patients and highlights the need to review existing WHO ILI and SARI case definitions.