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ORIGINAL RESEARCH article
Front. Psychiatry
Sec. Molecular Psychiatry
Volume 15 - 2024 |
doi: 10.3389/fpsyt.2024.1429953
Dorsolateral prefrontal cortex proteome analyses and machine learning models can be applied to the identification of biomarkers related to suicide
Provisionally accepted- 1 Programa de Doctorado en Ciencias Biomédicas, Universidad Nacional Autónoma de México, Mexico City, Mexico
- 2 National Institute of Genomic Medicine (INMEGEN), Mexico City, Mexico
- 3 National Institute of Psychiatry Ramon de la Fuente Muñiz (INPRFM), Mexico City, México, Mexico
- 4 Instituto de Ciencias Forenses (INCIFO), Ciudad de Mexico, México, Mexico
- 5 Instituto Nacional de Geriatría, Mexico City, México, Mexico
- 6 Faculty of Sciences, National Autonomous University of Mexico, Mexico City, México, Mexico
Suicide is a significant public health problem, with increased rates in low-and middleincome countries such as Mexico; therefore, suicide prevention is important. Suicide is a complex and multifactorial phenomenon in which biological and social factors are involved. Several studies on the biological mechanisms of suicide have analyzed the proteome of the dorsolateral prefrontal cortex (DLPFC) in people who have died by suicide. The aim of this work was to analyze the protein expression profile in the DLPC of individuals who died by suicide in comparison to age-matched controls in order to gain information on the molecular basis in the brain of these individuals and the selection of potential biomarkers for the identification of individuals at risk of suicide. In addition, this information was analyzed using machine learning (ML) algorithms to propose a model for predicting suicide. Brain tissue (Brodmann area 9) was sampled from male cases (n=9) and age-matched controls (n=7). We analyzed the proteomic differences between the groups using two-dimensional polyacrylamide gel electrophoresis and mass spectrometry. Twelve differentially expressed proteins were also identified (t14 £ 0.5). Using Western blotting, we validated the decrease in expression of peroxiredoxin 2 and alpha-internexin in the suicide cases. ML models were trained using densitometry data from the 2D gel images of each selected protein and the models could differentiate between both groups (control and suicide cases). Bioinformatics tools were used to clarify the biological relevance of the differentially expressed proteins. Our exploratory pathway analysis highlighted oxidative stress responses and neurodevelopmental pathways. Here we show that these proteins of the DLPFC may help to identify brain processes associated with suicide and they could be validated as potential biomarkers of this outcome.
Keywords: dorsolateral prefrontal cortex, Proteome, machine learning, Suicide, Brain
Received: 09 May 2024; Accepted: 24 Dec 2024.
Copyright: © 2024 Rojo-Romero, Gutiérrez-Nájera, Cruz-Fuentes, Romero-Pimentel, Mendoza Morales, García-Dolores, Morales, Castro, Gonzalez-Saenz, Torres-Campuzano, Medina-Sánchez, HERNANDEZ-FONSECA, Nicolini and JIMENEZ-GARCIA. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
* Correspondence:
Nora Gutiérrez-Nájera, National Institute of Genomic Medicine (INMEGEN), Mexico City, Mexico
LUIS FELIPE JIMENEZ-GARCIA, Faculty of Sciences, National Autonomous University of Mexico, Mexico City, 04510, México, Mexico
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