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ORIGINAL RESEARCH article
Front. Plant Sci.
Sec. Functional and Applied Plant Genomics
Volume 16 - 2025 |
doi: 10.3389/fpls.2025.1530585
This article is part of the Research Topic Plant Genotyping: From Traditional Markers to Modern Technologies, Volume II View all 3 articles
Genotyping-by-sequencing derived SNP markers reveal genetic diversity and population structure of Dactylis glomerata germplasm
Provisionally accepted- 1 Sivas bilim ve teknoloji fakültesi, Sivas, Türkiye
- 2 National Institute of Agricultural Technology (INTA), Agricultural Experimental Station, Mendoza, Mendoza, Argentina
- 3 Instituto Nacional de Tecnología Agropecuaria (INTA), Estación Experimental Agropecuaria La Consulta, La Consulta, Argentina
- 4 Mustafa Kemal University, Antakya, Hatay, Türkiye
- 5 Jeju National University, Jeju City, Jeju, Republic of Korea
- 6 Mersin University, Mersin, Mersin, Türkiye
Orchardgrass (Dactylis glomerata L.), a widely cultivated cool-season perennial, is an important forage crop due to its adaptability, high nutritional value, and substantial biomass. Understanding its genetic diversity and population structure is crucial for developing resilient cultivars that can withstand climate change, diseases, and resource limitations. Despite its global significance in fodder production, the genetic potential of many regional accessions remains unexplored, limiting breeding efforts. This study investigates the genetic diversity (GD) and population structure of 91 accessions of D. glomerata from Turkey and Iran using genotyping-by-sequencing based single nucleotide polymorphism (SNP) markers. A total of 2913 high-quality SNP markers revealed substantial genetic variability across provinces. Notably, accessions from Erzurum exhibited the highest GD (mean GD: 0.26; He: 0.5328), while provinces such as Bursa and Muğla demonstrated lower GD (mean GD: 0.15; He < 0.22), suggesting potential genetic bottlenecks. Population structure analysis using Bayesian clustering, PCoA and UPGMA dendrograms divided the accessions into three distinct clusters, with cluster membership largely reflecting geographical origins, and dry biomass content. Cluster II revealed higher GD, associated with enhanced biomass production (128 g/plant), the most important agronomic trait in forage species, supporting the notion of heterosis in breeding programs. The majority of the genetic variation (85.8%) was observed within clusters, with minimal differentiation among clusters (FST = 0.007). Genome-wide association studies (GWAS) identified significant marker-trait associations for dry biomass weight, a critical agronomic trait, with markers DArT-100715788, DArT-101043591, and DArT-101171265 and DArT-101090822 located on Chromosomes 1, 6, and 7 respectively. These findings highlight the importance of regional diversity for maintaining adaptive potential in future breeding programs.
Keywords: Dactylis glomerata, genetic diversity, SNP markers, Forage breeding, population structure, GWAS
Received: 19 Nov 2024; Accepted: 07 Jan 2025.
Copyright: © 2025 Altaf, Cavagnaro, Kokten, Ali, Morales, Tatar, Bedir, Nadeem, AASIM, Celiktas, Shafi and Baloch. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
* Correspondence:
Faheem Shehzad Baloch, Mersin University, Mersin, 33343, Mersin, Türkiye
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