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ORIGINAL RESEARCH article

Front. Plant Sci.
Sec. Plant Bioinformatics
Volume 16 - 2025 | doi: 10.3389/fpls.2025.1527382
This article is part of the Research Topic Multi-omics and Computational Biology in Horticultural Plants: From Genotype to Phenotype, Volume III View all 4 articles

Comprehensive transcriptome and proteome analysis revealed the molecular mechanisms of melatonin priming and waterlogging response in peach

Provisionally accepted
Xianbin Gu Xianbin Gu *Linghong Lu Linghong Lu Jing Gao Jing Gao Fei Fan Fei Fan Genhua Song Genhua Song Huiqin Zhang Huiqin Zhang
  • Zhejiang Academy of Agricultural Sciences, Hangzhou, China

The final, formatted version of the article will be published soon.

    Waterlogging substantially hampers the growth and development of plants. The escalating trajectory of global climate change is heightening both the frequency and intensity of waterlogging events. Peach trees are particularly vulnerable to waterlogging, with the resultant hypoxia in the rhizosphere profoundly influencing their growth and productivity. This study explored the responses of peach seedlings to waterlogging and the regulatory effects of melatonin priming. After a 24-h waterlogging treatment, a significant increase in relative electrical conductivity and an accumulation of reactive oxygen species were observed, ion permeability was markedly alleviated by melatonin priming. Transcriptomic and proteomic analyses were conducted on peach root samples to elucidate the molecular mechanisms involved in the response to waterlogging and melatonin priming. Transcriptome analysis implicated genes related to 'DNA-binding transcription factor activity', such as AP2/ERF, HSF and WRKY transcription factors, in response to waterlogging. The glycolysis/gluconeogenesis pathway was also significantly enriched, indicating its critical role in the metabolic response to waterlogging. A correlation analysis between differentially expressed genes and proteins highlighted the regulation of numerous genes at both the transcriptional and translational levels. Furthermore, core DEGs/DEPs, including heat shock proteins and stress-related proteins, were identified. Notably, ERF VII member ERF071 (Prupe.8G264900), ADH (Prupe.8G018100), and PCO (Prupe.7G011000) emerged as potential targets for genetic manipulation to enhance waterlogging tolerance in peach. This research provides targets for breeding waterlogging-tolerant varieties and strategies to mitigate waterlogging stress in peach.

    Keywords: Prunus persica, waterlogging, Melatonin, Transcriptome, Proteome

    Received: 13 Nov 2024; Accepted: 15 Jan 2025.

    Copyright: © 2025 Gu, Lu, Gao, Fan, Song and Zhang. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Xianbin Gu, Zhejiang Academy of Agricultural Sciences, Hangzhou, China

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.