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ORIGINAL RESEARCH article

Front. Plant Sci.
Sec. Plant Bioinformatics
Volume 15 - 2024 | doi: 10.3389/fpls.2024.1499875
This article is part of the Research Topic Recent Advances in Big Data, Machine, and Deep Learning for Precision Agriculture, Volume II View all 8 articles

Deep learning-enabled exploration of global spectral features for photosynthetic capacity estimation

Provisionally accepted
Xianzhi Deng Xianzhi Deng 1Xiaolong Hu Xiaolong Hu 1*Liangsheng Shi Liangsheng Shi 1*Chenye Su Chenye Su 1Jinmin Li Jinmin Li 1Shuai Du Shuai Du 1Shenji Li Shenji Li 2
  • 1 Wuhan University, Wuhan, China
  • 2 Urban Operation Management Center of Hengsha Township, Shanghai, China

The final, formatted version of the article will be published soon.

    Spectral analysis is a widely used method for monitoring photosynthetic capacity.However, vegetation indices-based linear regression exhibits insufficient utilization of spectral information, while full spectra-based traditional machine learning has limited representational capacity (partial least squares regression) or uninterpretable (convolution). In this study, we proposed a deep learning model with enhanced interpretability based on attention and vegetation indices calculation for global spectral feature mining to accurately estimate photosynthetic capacity. We explored the ability of the model to uncover the optimal vegetation indices form and illustrated its advantage over traditional methods. Furthermore, we verified that power compression was an effective method for spectral processing. Our results demonstrated that the new model outperformed traditional models, with an increase in the coefficient of determination (R 2 ) of 0.01-0.43 and a decrease in root mean square error (RMSE) of 1.58-12.48 μmol m -2 s -1 . The best performance of our model in R 2 was 0.86 and 0.81 for maximum carboxylation rate (Vcmax) and maximum electron transport rate (Jmax), respectively. The photosynthesis-sensitive spectral bands identified by our model were predominantly in the visible range. The most sensitive vegetation indices form discovered by our model was 𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅 𝑛𝑛𝑛𝑛𝑛𝑛𝑛𝑛-𝑖𝑖𝑛𝑛𝑖𝑖𝑛𝑛𝑛𝑛𝑛𝑛𝑛𝑛𝑖𝑖 +𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅 𝑔𝑔𝑛𝑛𝑛𝑛𝑛𝑛𝑛𝑛/𝑏𝑏𝑏𝑏𝑏𝑏𝑛𝑛 𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅 𝑛𝑛𝑛𝑛𝑛𝑛𝑛𝑛-𝑖𝑖𝑛𝑛𝑖𝑖𝑛𝑛𝑛𝑛𝑛𝑛𝑛𝑛𝑖𝑖 ×𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅𝑅 𝑛𝑛𝑛𝑛𝑖𝑖 . Our model provides a new framework for interpreting spectral information and accurately estimating photosynthetic capacity.

    Keywords: Hyperspectral data, spectral sensitive band, vegetation index, photosynthetic capacity, deep learning, Power compression

    Received: 22 Sep 2024; Accepted: 20 Dec 2024.

    Copyright: © 2024 Deng, Hu, Shi, Su, Li, Du and Li. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence:
    Xiaolong Hu, Wuhan University, Wuhan, China
    Liangsheng Shi, Wuhan University, Wuhan, China

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