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ORIGINAL RESEARCH article

Front. Plant Sci.
Sec. Plant Bioinformatics
Volume 15 - 2024 | doi: 10.3389/fpls.2024.1497230

Unveiling the Molecular Mechanism of Sepal Curvature in Dendrobium Section Spatulata through Full-Length Transcriptome and RNA-Seq Analysis

Provisionally accepted
Xuefeng Qu Xuefeng Qu 1Na Li Na Li 2Cong Xu Cong Xu 1Zifeng Huang Zifeng Huang 1Chunyan Li Chunyan Li 2Yang Jiang Yang Jiang 2Guizhao Zheng Guizhao Zheng 1Haiping Fu Haiping Fu 1Guangyan Zhang Guangyan Zhang 1Chuan Liu Chuan Liu 2*
  • 1 Dongguan Research Center of Agricultural Sciences, Dongguan, Dongguan, China
  • 2 Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, Chongqing, China

The final, formatted version of the article will be published soon.

    The distinctive curvature of sepals and petals in Dendrobium Section Spatulata orchids is a notable feature, though the underlying molecular and cellular mechanisms governing this trait remain unclear. In this study, we analyzed the morphological characteristics of five hybrids and investigated the transcriptomic basis of sepal curvature specifically in hybrid H5, which exhibits pronounced curling in its sepals compared to relatively flat petals. Full-length transcriptomic sequencing assembled a reference transcriptome with 94,528 non-redundant transcripts, while traditional RNA-seq identified 821 differentially expressed genes (DEGs) between sepals and petals, with 72.8% upregulated in sepals. Gene ontology and pathway enrichment analysis revealed significant involvement of DEGs in cytokinesis, cytoskeletal organization, and energy metabolism, suggesting that these processes play key roles in sepal morphogenesis. Notably, myosin II filament organization was implicated in generating the mechanical forces responsible for curling, while enriched metabolic pathways provided energy for these developmental processes. Morphological analysis revealed that the cells in the upper layers of the sepal were smaller and more numerous than those in the lower layers, suggesting that differential cell growth contributes to sepal curvature. Quantitative real-time PCR (qRT-PCR) analysis of selected genes confirmed the differential expression patterns observed in RNA-seq, supporting the reliability of our transcriptomic findings. Our findings highlight the coordination between cellular mechanics, cytoskeletal dynamics, and metabolic regulation in shaping sepal morphology. This study provides novel insights into the molecular regulation of floral organ curvature and offers a framework for future research on the genetic and cellular basis of orchid morphogenesis.

    Keywords: Dendrobium, Floral development, sepal curvature, Transcriptomics, Cytokinesis, Myosin filament

    Received: 16 Sep 2024; Accepted: 18 Nov 2024.

    Copyright: © 2024 Qu, Li, Xu, Huang, Li, Jiang, Zheng, Fu, Zhang and Liu. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Chuan Liu, Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, Chongqing, China

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.