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ORIGINAL RESEARCH article
Front. Plant Sci.
Sec. Plant Bioinformatics
Volume 15 - 2024 |
doi: 10.3389/fpls.2024.1483538
This article is part of the Research Topic Integrating Omics to Unveil Legume Stress Response Mechanisms View all 5 articles
Integrated metabolome and transcriptome analysis reveals potential mechanism during the bud dormancy transition of Astragalus membranaceus (Fisch.) Bge. var. mongholicus (Bge.) Hsiao
Provisionally accepted- 1 Inner Mongolia University, Hohhot, China
- 2 University of Science and Technology of China fellow, Hefei, China
Astragalus membranaceus (Fisch.) Bge. var. mongholicus (Bge.) Hsiao (AMM) is an important medicinal plant that is used for both medicine and food. It is widely used in East Asia and South Asia. It is normally cultivated by transplanting annual rhizomes. Understanding the dormancy of underground buds of AMM is essential for its harvest and transplantation. Despite the thorough research on the dormancy of bud in perennial woody plants, perennial herbs, and especially medicinal plants, such as AMM, have been rarely studied. We analyzed the transcriptome and non-targeted metabolome of dormant buds stage-by-stage to investigate the regulatory mechanism of the transition of endo- to ecodormancy. A total of 1069 differentially accumulated metabolites (DAMs) were identified, which participated in amino acid metabolism and carbohydrate metabolism. Transcriptome analysis revealed a total of 16832 differentially expressed genes (DEGs). Functional enrichment analysis indicated that carbohydrate metabolism, hormone signaling pathways, and amino acid metabolism contributed to the transition from endo- to ecodormancy. The starch and sucrose metabolism and hormone signaling pathways were mainly analyzed in the transition between different dormancy states. During the transition from endo- to ecodormancy, the highest content of indole-3-acetic acid (IAA) and the most DEGs enriched in the IAA signaling pathway demonstrate that IAA may play a key role in this process. We obtained the candidate genes through co-expression network analysis, such as BGL, GN, glgC, and glgB, involved in starch and sucrose metabolism. The transcription factors MYB, ERF, bHLH, zinc finger, and MADS-box may regulate these genes involved in hormone signal transduction and starch and sucrose metabolism, which are critical for regulating the transition from endo- to ecodormancy in the buds of AMM. To sum up, these results provide insights into the novel regulatory mechanism of the transition of endo- to ecodormancy in underground buds of AMM, and offer new analytical strategies for breaking dormancy in advance and shortening breeding time.
Keywords: Astragalus membranaceus (Fisch.) Bge. var. mongholicus (Bge.) Hsiao, Bud dormancy transition, Metabolome, Transcriptome, co-expression network
Received: 20 Aug 2024; Accepted: 18 Dec 2024.
Copyright: © 2024 Guan, Zhao, Chen, Zhang, Yang, Sun and Chen. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
* Correspondence:
Shuying Sun, Inner Mongolia University, Hohhot, China
Guilin Chen, Inner Mongolia University, Hohhot, China
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