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ORIGINAL RESEARCH article

Front. Plant Sci.
Sec. Plant Genetics, Epigenetics and Chromosome Biology
Volume 15 - 2024 | doi: 10.3389/fpls.2024.1477383

Genome-wide identification and expression analysis of CASPL gene family in Zea mays (L.)

Provisionally accepted
Baoping Xue Baoping Xue 1Zicong Liang Zicong Liang 2Dongyang Li Dongyang Li 2Yue Liu Yue Liu 3Chang Liu Chang Liu 2,4*
  • 1 College of Life Sciences, Wuhan University, Wuhan, Hubei Province, China
  • 2 College of Agronomy, Shenyang Agricultural University, Shenyang, Liaoning Province, China
  • 3 Institute of Applied Ecology, Chinese Academy of Sciences (CAS), Shenyang, Liaoning Province, China
  • 4 Shenyang Agricultural University, Shenyang, China

The final, formatted version of the article will be published soon.

    Casparian strip membrane domain proteins like (CASPL), exhibit profound associations with root development, stress responsiveness and mineral element uptake in plants. Nonetheless, a comprehensive bioinformatics analysis of the ZmCASPL gene family in maize remains unreported. In the study, we have identified 47 ZmCASPL members at the whole-genome level, systematically classifying them into six distinct groups. Furthermore, our analysis revealed that the same group of ZmCASPL contains similar gene structures and conserved motifs. Duplication events showed whole genome duplication (WGD) and tandem duplication (TD) contribute to the generation of the ZmCASPL gene family together in maize, but the former plays a more prominent role. Furthermore, we observed that most ZmCASPL genes contain MYB-binding sites (CAACCA), which are associated with the Casparian strip. Utilizing RNA-seq data, we found that ZmCASPL21 and ZmCASPL47 are specifically highly expressed only in the roots. This finding implies that ZmCASPL21 and ZmCASPL47 may be involved in the Casparian strip development. Additionally, RNA-seq analysis illuminated that drought, salt, heat, cold stresses, low nitrogen and phosphorus conditions, as well as pathogen infection, significantly impact the expression patterns of ZmCASPL genes. RT-qPCR revealed that ZmCASPL 5/13/25/44 genes showed different expression patterns under PEG and NaCl treatments. Collectively, these findings provide a robust theoretical foundation for further investigations into the functional roles of the ZmCASPL gene family in maize.

    Keywords: Zea mays, CASPL gene family, Systematic evolution, Expression pattern, Biotic and abiotic stress

    Received: 07 Aug 2024; Accepted: 08 Oct 2024.

    Copyright: © 2024 Xue, Liang, Li, Liu and Liu. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Chang Liu, Shenyang Agricultural University, Shenyang, China

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