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ORIGINAL RESEARCH article

Front. Plant Sci.
Sec. Plant Bioinformatics
Volume 15 - 2024 | doi: 10.3389/fpls.2024.1446561

Full-length RNA sequencing and single-nucleus sequencing deciphers programmed cell death and developmental trajectories in laticiferous canals of Decaisnea insignis fruits

Provisionally accepted
Gen Li Gen Li 1Qian Zhao Qian Zhao 2Xinwei Shi Xinwei Shi 1Bin Li Bin Li 1Luyao Yang Luyao Yang 1Yanwen Wang Yanwen Wang 1YaFu Zhou YaFu Zhou 1*
  • 1 Xi’an Botanical Garden of Shaanxi Province, Xian, China
  • 2 Shangluo University, Shangluo, Shanxi Province, China

The final, formatted version of the article will be published soon.

    Abstract:Programmed cell death (PCD) is a fundamental biological process crucial for plant development. Despite recent advancements in our understanding of PCD's molecular mechanisms, the intricate orchestration of this process within plant cells remains enigmatic. To address this knowledge gap, the present study focuses on Decaisnea insignis, a plant species renowned for its unique fruit anatomy, including laticiferous canals that secrete latex. While extensive anatomical studies have elucidated the structural features of these canals, molecular insights into their developmental regulation, particularly the involvement of PCD, are lacking. Using sequencing technology combining full-length RNA sequencing and single-nucleus RNA sequencing (snRNA-seq) in combination with ultrastructural analyses, our study revealed a cellular map of Decaisnea insignis fruit at the single-cell level and identified different cell types. In particular, we identified a possible PCD-mediated cluster of Decaisnea insignis fruit lactiferous canals in epidermal cells and clarified the expression patterns of DiRD21A (a hydrolase) and DiLSD1 (a transcription factor), which may be closely related to the development of laticiferous canals in Decaisnea insignis fruits. By integrating high-resolution gene expression profiling with visual insights into cellular transformations, we sought to more precisely characterize the regulatory role of PCD during the developmental formation of lactiferous canals in Decaisnea insignis fruit.

    Keywords: snRNA-seq, Full-Length RNA seq, Decaisnea insignis, Fruit development, programmed cell death(PCD)

    Received: 10 Jun 2024; Accepted: 25 Jul 2024.

    Copyright: © 2024 Li, Zhao, Shi, Li, Yang, Wang and Zhou. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: YaFu Zhou, Xi’an Botanical Garden of Shaanxi Province, Xian, China

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