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ORIGINAL RESEARCH article
Front. Plant Sci.
Sec. Plant Bioinformatics
Volume 15 - 2024 |
doi: 10.3389/fpls.2024.1445365
Asteraceae Genome Database (AGD): A comprehensive platform for Asteraceae genomics
Provisionally accepted- 1 Tianjin University of Traditional Chinese Medicine, Tianjin, China
- 2 China Resources Sanjiu Pharmaceutical Co Ltd, Huaibei, Anhui Province, China
- 3 Chengdu University of Traditional Chinese Medicine, Chengdu, China
Asteraceae, the largest family of angiosperms, has attracted widespread attention for its exceptional medicinal, horticultural, and ornamental value. However, researches on Asteraceae plants face challenges due to their intricate genetic background. With the continuous advancement of sequencing technology, a vast number of genomes and genetic resources from Asteraceae species have been accumulated. This has spurred a demand for comprehensive genomic analysis within this diverse plant group. To meet this need, we developed the Asteraceae Genomics Database (AGD; http://cbcb.cdutcm.edu.cn/AGD/). The AGD serves as a centralized and systematic resource, empowering researchers in various fields such as gene annotation, gene family analysis, evolutionary biology, and genetic breeding. AGD not only encompasses high-quality genomic sequences, and organelle genome data, but also provides a wide range of analytical tools, including BLAST, JBrowse, SSR Finder, HmmSearch, Heatmap, Primer3, PlantiSMASH, and CRISPRCasFinder. These tools enable users to conveniently query, analyze, and compare genomic information across various Asteraceae species. The establishment of AGD holds great significance in advancing Asteraceae genomics, promoting genetic breeding, and safeguarding biodiversity by providing researchers with a comprehensive and user-friendly genomics resource platform.
Keywords: Asteraceae, Genome, Taxonomy, analysis tools, Asteraceae Genome
Received: 07 Jun 2024; Accepted: 30 Jul 2024.
Copyright: © 2024 Liang, Hanting, Guoqing, Zhaoyu, Fanbo, LiangRui, Liu, Zheng, Guichun, Xinyu, Chen, Song and Boli. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
* Correspondence:
Yang Hanting, Chengdu University of Traditional Chinese Medicine, Chengdu, China
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