AUTHOR=Gašić Katarina , Zlatković Nevena , Kuzmanović Nemanja 

TITLE=Polyphasic study of phytopathogenic bacterial strains associated with deep bark canker of walnut in Serbia revealed a new species, Brenneria izbisi sp. nov

JOURNAL=Frontiers in Plant Science

VOLUME=13

YEAR=2022

URL=https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2022.1055186

DOI=10.3389/fpls.2022.1055186

ISSN=1664-462X

ABSTRACT=<p>Serious outbreaks of walnut deep bark canker were observed on young walnut trees (<italic>Juglans regia</italic> L.) in two localities in the northern part of Serbia during 2020. From the symptomatic walnut tissues, two types of bacterial colonies were isolated, predominantly, light cream, circular and smooth colonies, as well as small, yellowish, mucoid and convex ones. PCR analysis and phenotypic assays suggested that the former group belongs to <italic>Brenneria</italic> spp., while the latter isolates were identified as <italic>Xanthomonas arboricola</italic> pv. <italic>juglandis</italic>. Within the <italic>Brenneria</italic> group, two strains were identified as <italic>Brenneria nigrifluens</italic>, while other 15 strains did not belong to any <italic>Brenneria</italic> species described so far. Therefore, we selected four representative strains of the unknown <italic>Brenneria</italic> sp. and subjected them to polyphasic analysis. As expected, in a phylogenetic tree based on partial 16S rDNA sequences, four novel strains grouped with other <italic>Brenneria</italic> representatives, and showed close phylogenetic relationship to <italic>Brenneria salicis</italic>. Furthermore, multilocus sequence analysis (MLSA) based on the partial sequences of <italic>atpD, gyrB</italic>, <italic>infB</italic> and <italic>rpoB</italic> housekeeping genes and core-genome phylogeny indicated that the studied strains form a novel and a clearly separate <italic>Brenneria</italic> lineage. Overall genome relatedness indices showed that they represent a new <italic>Brenneria</italic> species. The new species can be differentiated from the other <italic>Brenneria</italic> spp. infecting walnut and closely related <italic>B. salicis</italic> strains based on phenotypic characteristics, as well. Moreover, the pathogenicity tests on two-year-old walnut plants proved the ability of strains to cause necrosis and longitudinal black lesions and cracks on the trunk and branches of walnut trees. Overall, polyphasic characterization showed that the studied strains isolated from walnut with symptoms of deep bark canker represent a novel species of the genus <italic>Brenneria</italic> for which the name <italic>Brenneria izbisi</italic> sp. nov. is proposed. The type strain of <italic>B. izbisi</italic> is KBI 423<sup>T</sup> (= CFBP 9035<sup>T</sup> = LMG 32479<sup>T</sup>). To facilitate rapid identification of newly described species, a conventional PCR protocol and primers targeting the putative gene <italic>hrpP</italic>, were developed. Further study should reveal the potential role of each pathogen isolated from symptomatic walnut in disease development as well as possible interaction between them.</p>