AUTHOR=Yagi Yusuke , Shiina Takashi TITLE=Recent advances in the study of chloroplast gene expression and its evolution JOURNAL=Frontiers in Plant Science VOLUME=5 YEAR=2014 URL=https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2014.00061 DOI=10.3389/fpls.2014.00061 ISSN=1664-462X ABSTRACT=

Chloroplasts are semiautonomous organelles which possess their own genome and gene expression system. However, extant chloroplasts contain only limited coding information, and are dependent on a large number of nucleus-encoded proteins. During plant evolution, chloroplasts have lost most of the prokaryotic DNA-binding proteins and transcription regulators that were present in the original endosymbiont. Thus, chloroplasts have a unique hybrid transcription system composed of the remaining prokaryotic components, such as a prokaryotic RNA polymerase as well as nucleus-encoded eukaryotic components. Recent proteomic and transcriptomic analyses have provided insights into chloroplast transcription systems and their evolution. Here, we review chloroplast-specific transcription systems, focusing on the multiple RNA polymerases, eukaryotic transcription regulators in chloroplasts, chloroplast promoters, and the dynamics of chloroplast nucleoids.