AUTHOR=Yang Jing , Zhang Yuying , Zhao Jin , Gao Yue , Liu Zhongfang , Zhang Pengjiu , Fan Jianbin , Zhou Xuguo , Fan Renjun 

TITLE=Selection of Reference Genes for RT-qPCR Analysis Under Extrinsic Conditions in the Hawthorn Spider Mite, Amphitetranychus viennensis

JOURNAL=Frontiers in Physiology

VOLUME=11

YEAR=2020

URL=https://www.frontiersin.org/journals/physiology/articles/10.3389/fphys.2020.00378

DOI=10.3389/fphys.2020.00378

ISSN=1664-042X

ABSTRACT=<p>Hawthorn spider mite, <italic>Amphitetranychus viennensis</italic> Zacher, is an economically important arthropod pest for fruit trees and woody ornamental plants. Extensive and repetitive use of synthetic acaricides has led to the development of resistance in <italic>A. viennensis</italic>. To understand the molecular basis of pesticide resistance, and to develop genetic-based control alternatives (e.g., RNAi-based biopesticides), a standardized protocol for real-time quantitative reverse transcription PCR (RT-qPCR) is needed. In the proceeding phase of this research, we screened for the internal references for RT-qPCR analysis from a pool of <italic>A. viennensis</italic> housekeeping genes under the intrinsic conditions, including developmental stage, sex, and diapause. Here, we continued our efforts to search for the reference genes under an array of extrinsic conditions, including temperature, humidity, photoperiod, host plant, and dietary RNAi. The stability of these candidate reference genes was investigated using geNorm, NormFinder, BestKeeper, and ΔCt method, respectively. Finally, RefFinder, a statistical platform integrating all four algorisms, provided a comprehensive list of genes for each extrinsic condition: (1) <italic>EF1A</italic>, α<italic>-tubulin</italic> and <italic>Actin3</italic> were the best candidates for temperature, (2) <italic>GAPDH</italic>, <italic>18S</italic>, and <italic>Actin3</italic> were the most stable genes for humidity, (3) <italic>V-ATPase B</italic>, <italic>Actin3</italic>, and <italic>18S</italic> were the top reference genes for photoperiod, (4) <italic>GAPDH</italic>, <italic>V-ATPase B</italic>, and α<italic>-tubulin</italic> were recommended for host plants, and (5) <italic>GAPDH</italic>, <italic>V-ATPase B</italic>, and <italic>RPS9</italic> were the top choices for dietary RNAi. Overall, <italic>V-ATPase B</italic>, <italic>GAPDH</italic>, and <italic>Actin3</italic> were the most commonly selected reference genes in <italic>A. viennensis</italic> regardless of the experimental conditions, including both intrinsic and extrinsic. Information present here lays the foundation for the genomic and functional genomic research in <italic>A. viennensis</italic>.</p>