Skip to main content

ORIGINAL RESEARCH article

Front. Pharmacol.
Sec. Pharmacology of Infectious Diseases
Volume 15 - 2024 | doi: 10.3389/fphar.2024.1459964
This article is part of the Research Topic Repositioning Natural Products for Drug Discovery against Neglected and Infectious Diseases View all articles

Antifungal Potential of Marine Bacterial Compounds by Inhibiting Candida albicans Yck2 to Overcome Echinocandin Resistance: A Molecular Dynamics Study

Provisionally accepted
  • Najran University, Najran, Saudi Arabia

The final, formatted version of the article will be published soon.

    Candida albicans (C. albicans), a common fungal pathogen, poses a significant threat to immunocompromised individuals, particularly due to the emergence of resistance against echinocandins, a primary class of antifungal agents. Yck2 protein, a key regulator of cell wall integrity and signaling pathways in C. albicans, was targeted to overcome this resistance. A virtual screening was used to identify Yck2 inhibitors from marine bacterial compounds. Further re-docking, molecular dynamics simulations, and various analyses such as RMSD, RMSF, hydrogen bonding, free binding energy calculations, and RG-RMSD-based free energy landscape were conducted to evaluate the efficacy and stability of the identified compounds. Among the compounds screened, CMNPD27166 and CMNPD27283 emerged as the most promising candidates, demonstrating superior binding affinities, enhanced stability, and favorable interaction dynamics with Yck2, surpassing both the control and other compounds in efficacy. In contrast, CMNPD19660 and CMNPD24402, while effective, showed lesser potential. These findings highlight the utility of computational drug discovery techniques in identifying and optimizing potential therapeutic agents and suggest that marine-derived molecules could significantly impact the development of novel antifungal therapies. Further experimental validation of the leading candidates, CMNPD27166 and CMNPD27283, is recommended to confirm their potential as effective antifungal agents against echinocandin-resistant C. albicans infections.-IT Solubility (mol/l) 7.01E-08 1.93E-08 1.08E-13 9.62E-11 Silicos-IT class Poorly soluble Poorly soluble Insoluble Insoluble GI absorption High High Low High BBB permeant No No No No Pgp substrate Yes Yes Yes Yes CYP1A2 inhibitor No No No Yes CYP2C19 inhibitor No No No No CYP2C9 inhibitor No Yes No No CYP2D6 inhibitor Yes No No No CYP3A4 inhibitor

    Keywords: Yck2 inhibitors, C. albicans, Marine-derived compound, Antifungal Agents, molecular dynamics

    Received: 05 Jul 2024; Accepted: 17 Sep 2024.

    Copyright: © 2024 Alshahrani. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Dr. Mohammed M. Alshahrani, Najran University, Najran, Saudi Arabia

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.