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ORIGINAL RESEARCH article

Front. Pharmacol.
Sec. Pharmacology of Anti-Cancer Drugs
Volume 15 - 2024 | doi: 10.3389/fphar.2024.1435284

Predicting the Efficiency of Chidamide in Patients with Angioimmunoblastic T-cell Lymphoma Using Machine Learning Algorithm

Provisionally accepted
Chunlan Zhang Chunlan Zhang 1Juan Xu Juan Xu 1*Mingyu Gu Mingyu Gu 2*Yun Tang Yun Tang 1*Wenjiao Tang Wenjiao Tang 1Jie Wang Jie Wang 1Qinyu Liu Qinyu Liu 1*Yunfan Yang Yunfan Yang 1*Xushu Zhong Xushu Zhong 1*Caigang Xu Caigang Xu 1*
  • 1 West China Hospital, Sichuan University, Chengdu, China
  • 2 West China School of Medicine, West China Hospital, Sichuan University, Chengdu, Sichuan Province, China

The final, formatted version of the article will be published soon.

    Background: Chidamide is subtype-selective histone deacetylase (HDAC) inhibitor that showed promising result in clinical trials to improve prognosis of angioimmunoblastic T-cell lymphoma (AITL) patients. However, in real world settings, contradictory reports existed as to whether chidamide improve overall survival (OS). Therefore, we aimed to develop an interpretable machine learning (ML)-based model to predict the 2-year OS of AITL patients based on chidamide usage and baseline features. Methods: A total of 183 patients with AITL were randomly divided into training set and testing set. We used five ML algorithms to build predictive models. Recursive feature elimination (RFE) method was used to filter for the most important features. The ML models were interpreted and the relevance of the selected features was determined using the Shapley additive explanations (SHAP) method and the local interpretable modelagnostic explanation (LIME) algorithm. Results: A total of 183 patients with newly diagnosed AITL from 2012-2022 from 3 centers in China were enrolled in our study. Seventy-one patients were dead within 2 years after diagnosis. Five ML algorithms were built based on chidamide usage and 16 baseline features to predict 2-year OS. Catboost model presented to be the best predictive model. After RFE screening, 12 variables demonstrated the best performance (AUC=0.8651). Using chidamide ranked third among all the variables that correlated with 2-year OS. Conclusion: This study demonstrated that the Catboost model with 12 variables could effectively predict the 2-year OS of AITL patients. Combining chidamide in the treatment therapy was positively correlated with longer OS of AITL patients.

    Keywords: machine learning, Chidamide, prognosis, Angioimmunoblastic T-cell lymphoma, biomarker

    Received: 20 May 2024; Accepted: 16 Aug 2024.

    Copyright: © 2024 Zhang, Xu, Gu, Tang, Tang, Wang, Liu, Yang, Zhong and Xu. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence:
    Juan Xu, West China Hospital, Sichuan University, Chengdu, China
    Mingyu Gu, West China School of Medicine, West China Hospital, Sichuan University, Chengdu, 610000, Sichuan Province, China
    Yun Tang, West China Hospital, Sichuan University, Chengdu, China
    Qinyu Liu, West China Hospital, Sichuan University, Chengdu, China
    Yunfan Yang, West China Hospital, Sichuan University, Chengdu, China
    Xushu Zhong, West China Hospital, Sichuan University, Chengdu, China
    Caigang Xu, West China Hospital, Sichuan University, Chengdu, China

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.