Skip to main content

MINI REVIEW article

Front. Pharmacol., 26 November 2021
Sec. Experimental Pharmacology and Drug Discovery
This article is part of the Research Topic Sepsis: Basic, Clinical and Therapeutic Approaches View all 11 articles

TFEB Dependent Autophagy-Lysosomal Pathway: An Emerging Pharmacological Target in Sepsis

  • 1Medical Research Center, Southwest Hospital, Army Military Medical University, Chongqing, China
  • 2Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, China
  • 3Key Laboratory of Basic Pharmacology of Ministry of Education and Joint International Research Laboratory of Ethnomedicine of Ministry of Education, Zunyi Medical University, Zunyi, China

Sepsis is a life-threatening syndrome induced by aberrant host response towards infection. The autophagy-lysosomal pathway (ALP) plays a fundamental role in maintaining cellular homeostasis and conferring organ protection. However, this pathway is often impaired in sepsis, resulting in dysregulated host response and organ dysfunction. Transcription factor EB (TFEB) is a master modulator of the ALP. TFEB promotes both autophagy and lysosomal biogenesis via transcriptional regulation of target genes bearing the coordinated lysosomal expression and regulation (CLEAR) motif. Recently, increasing evidences have linked TFEB and the TFEB dependent ALP with pathogenetic mechanisms and therapeutic implications in sepsis. Therefore, this review describes the existed knowledge about the mechanisms of TFEB activation in regulating the ALP and the evidences of their protection against sepsis, such as immune modulation and organ protection. In addition, TFEB activators with diversified pharmacological targets are summarized, along with recent advances of their potential therapeutic applications in treating sepsis.

Introduction

Sepsis is the most common and severe syndrome that can affect a population of critically ill patients (Cecconi et al., 2018). Each year, there are an estimated 48.9 million causes of sepsis globally and 11.0 million sepsis-related deaths (Rudd et al., 2020). The latest definition (“Sepsis-3”) defines sepsis as life-threatening organ dysfunction induced by a dysregulated host response to infection (Cecconi et al., 2018). In this regard, the current pathogenic model refers to sepsis arising from infection. This is followed by the release of pathogen-associated molecular patterns (PAMPs) which induce excessive inflammation, aberrant immunity, and abnormalities in the complement and coagulatory systems; ultimately, these processes can lead to organ dysfunction and life-threatening shock (van der Poll et al., 2017; Cecconi et al., 2018). Although the main route of sepsis has been extensively characterized, there are several new paradigms being investigated with regards to the mechanisms that drive the progression of sepsis, including the disruption of cellular homeostasis and the induction of cell injury and organ damage (Cecconi et al., 2018). For example, there is an accumulating body of evidence indicating that the autophagy-lysosomal pathway (ALP), which plays a fundamental role in cellular homeostasis, antimicrobial immunity and organ protection, is commonly impaired in sepsis, thus resulting in a dysregulated host response and organ dysfunction (Venet and Monneret, 2018; Yin et al., 2019). Previous research has also demonstrated that the restoration or enhancement of autophagy and lysosomal function are highly beneficial and can improve the outcomes of patients with sepsis (Sun et al., 2018; Venet and Monneret, 2018; Ballabio and Bonifacino, 2020). Therefore, the regulation of the ALP may provide us with additional options for the therapeutic intervention of sepsis.

Transcriptional factor EB (TFEB) is a member of the microphthalmia (MiTF/TFE) transcriptional factor family (Irazoqui, 2020). TFEB binds directly to a conserved “GTCACGTGAC” motif, termed as the coordinated lysosomal expression and regulation (CLEAR) element in the promoter regions of targeted genes to upregulate their expression (Pan et al., 2019). Previous work has shown that the CLEAR element is highly enriched in a group of autophagy and lysosomal genes, thereby indicating that TFEB may play a key role in the ALP (Sardiello et al., 2009; Irazoqui, 2020). In addition, emerging evidence has associated TFEB and the TFEB-dependent ALP with pathogenic mechanisms in inflammatory diseases, including sepsis, thus creating the potential for the discovery of new therapeutic options (Jin et al., 2017; Li et al., 2017; Irazoqui, 2020; Ouyang et al., 2021). In this mini-review, we aim to summarize recent advances in the regulatory mechanisms associated with the TFEB- dependent ALP and discuss how the targeting of TFEB may provide us with pharmacological options for the intervention of sepsis.

The ALP and Sepsis

The ALP mainly consists of the autophagy machinery and its associated lysosomal degradation processes (Martini-Stoica et al., 2016). This pathway is evolutionarily conserved in eukaryotic cells and fundamental for the maintenance of cellular homeostasis under stressful conditions (Levine and Kroemer, 2019). Autophagy is characterized by the formation of intracellular double membrane autophagosomes, which deliver cytoplasmic cargo to the lysosomes for degradation (Yu et al., 2018; Levine and Kroemer, 2019). The formation of autophagosome is mediated by a group of core proteins encoded by the autophagy associated genes (ATG). ATG proteins are assembled as kinase complexes at specific stages to control the initiation, formation and elongation of autophagosomes. Then autophagosomes are fused with lysosomes, in which hydrolases and lysosome-associated proteins mediate the degradation of cargo substances (Ballabio and Bonifacino, 2020). Due to its key role in the sequential mechanisms that allow the clearance of cellular debris, the ALP is indispensable for overcoming metabolic insufficiency, organelle damage, and pathogen invasion. Moreover, defects in the ALP pathway are strongly implicated in numerous disease conditions associated with sepsis, including inflammation, organ injury, and aberrant immunity (Deretic, 2021).

It has been extensively demonstrated that the ALP is beneficial for balancing the immune response and protecting organ function during sepsis. A recent review article described autophagy features extensive crosstalk with innate immune cells, thereby exerting influence on phagocytosis in neutrophils, degranulation in mast cells, along with differentiation and migration in NK cells (Germic et al., 2019). Research has also demonstrated that the activation of autophagy in macrophages can confer protection against sepsis by restoring antimicrobial responses against bacterial infection (Lee et al., 2014; Fang F. et al., 2020) or by restricting the production of inflammatory mediators (Xu et al., 2018; Xia et al., 2019). It has been also widely demonstrated that the induction of autophagy alleviates liver damage (Lin et al., 2014), attenuates pulmonary inflammatory impairment (Nikouee et al., 2021), reduces acute kidney injury (Sunahara et al., 2018), protects against neuromuscular dysfunction (Chen G. et al., 2019) and improves cardiac function (Sun et al., 2018) in preclinical models of sepsis. In contrast, the suppression of autophagy during sepsis has been shown to result in accelerated apoptosis in T cells (Oami et al., 2017), the impairment of phagocytic capacity in microglia (Lee et al., 2019), and the aggravation of acute lung or liver injury (Oami et al., 2018; Liu et al., 2021). Similarly, defects in the degradative function of lysosomes is known to amplify sepsis-induced acute lung injury (Mo et al., 2018) and drive septic cardiac dysfunction (Jia et al., 2018). Moreover, disruption of the fusion between lysosomes and autophagosomes can be induced by excessively low doses of LPS, thus leading to persistent low-grade inflammation in macrophages (Baker et al., 2015). It is notable that the ALP is often disrupted during sepsis; this has been shown to worsen outcomes in preclinical models (Chien et al., 2011) and in clinical populations (Huang et al., 2021). Therefore, targeting the ALP may represent a promising strategy for the intervention of sepsis.

TFEB is a Central Regulatory HUB of the ALP

It is possible that the induction of initial acute cellular responses by ALP may not involve transcriptional machinery. However, the sustained upregulation of autophagy and lysosomal activity requires modulation by several key transcriptional factors (Levine and Kroemer, 2019). TFEB is a master transcriptional factor of the ALP (Martini-Stoica et al., 2016) and was initially identified as a master regulator of lysosomal biogenesis and degradation (Sardiello et al., 2009). Further studies confirmed that TFEB enhances lysosomal proteostasis of mutated or misfolded proteins (Song et al., 2013), induces a Ca2+-dependent exocytosis in the lysosomes (Medina et al., 2011), mediates the clearance of damaged lysosomes, and controls lysosomal membrane repair (Palmieri et al., 2011). Research has also shown that TFEB is an essential regulator at multiple stages of autophagy. For example, TFEB upregulates the expression of several autophagic genes (e.g., Becn1, Gabarap, and Maplc3b) bearing the CLEAR element (Palmieri et al., 2011) while the overexpression of TFEB is known to enhance the biogenesis of autophagosomes in multiple cell lines (Settembre et al., 2011). In addition, TFEB coordinates the fusion of autophagosomes with lysosomes, thereby providing balance in the ALP (Settembre et al., 2011). Collectively, these results suggest that TFEB is a central modulator in the ALP.

The activation of TFEB is mainly regulated by post-translational mechanisms (Zhu et al., 2021) (Figure 1). The mechanistic target of rapamycin complex 1 (mTORC1) and calcineurin are two central modulators that function in an opposing manner to connect upstream pathways with the phosphorylation of TFEB and its cytoplasmic/nuclear distribution (Zhu et al., 2021). Activated mTORC1 phosphorylates the Ser/Thr residue (S211) of TFEB; this allows binding to the YWHA/14-three to three protein that restricts TFEB from nuclear translocation (Irazoqui, 2020). In contrast, the activation of calcineurin by mechanisms that increase the cytosolic concentration of Ca2+ induces dephosphorylation of the S211 residue in TFEB, thereby releasing TFEB and enabling its nuclear translocation. Subsequently, TFEB upregulates the CLEAR gene network and enhances autophagy and the biogenesis of lysosomes (Irazoqui, 2020). TFEB can also be directly dephosphorylated by protein kinase B (Akt) (S467), glycogen synthase kinase 3β (GSK3β) (S138), and extracellular regulated protein kinase 2 (ERK2) (S142), thus suggesting a complicated regulatory pattern of phosphorylation/dephosphorylation that balances the activation of TFEB (Zhu et al., 2021). In addition to phosphorylation, epigenetic mechanisms may also modulate the activity of TFEB (Zhu et al., 2021). For example, the deacetylation of TFEB enhances its activation in microglia cells (Bao et al., 2016) while ubiquitination degrades phosphorylated TFEB and subsequently enhances activity of the ALP (Sha et al., 2017). In contrast, the modification of TFEB by N6-methyladenosine (m6A) mRNA has been shown to reduce the expression of TFEB and impair the TFEB-dependent autophagic process (Song HL. et al., 2019). Other research has shown that TFEB is regulated by multiple positive feedback loops. TFEB possesses the CLEAR sequences within its promoter, thus implicating an autoregulatory mechanism (Martini-Stoica et al., 2016). Moreover, TFEB has been shown to upregulate the expression of mucolipin 1 (Mcoln-1), a calcium channel in the lysosomal membrane, to increase calcium efflux from the lysosomes and activate calcineurin; this also suggests the existence of a positive feedback loop (Martini-Stoica et al., 2016).

FIGURE 1
www.frontiersin.org

FIGURE 1. Mechanisms of TFEB activation and the protective roles of TFEB dependent ALP in sepsis. (A) Regulation of TFEB activation by phosphorylation. TFEB is inactivated by mTORC1 dependent phosphorylation at S211 while ROS generation and nutrition deprivation inhibit mTORC1 and suppress TFEB phosphorylation (a1). Lysosomal Ca2+ release through the Mcoln-1 channel activate calcineurin and inhibit TFEB phosphorylation (a2). Inhibition of Akt, GSK3β or ERK2 dependent phosphorylation of TFEB promotes TFEB activation (a3) (B–C) Modulation of TFEB activation by epigenetic regulation (e.g., acetylation, ubiquitination) or expression control (e.g., m6A methylation, PPAR-α activation). (D) Positive feedback regulation of TFEB by transcriptional upregulation of tfeb and mcoln1 by TFEB. (E) TFEB upregulates autophagy, promotes lysosomal biogenesis and enhance immunity, thereby conferring protection in sepsis.

TFEB and TFEB Dependent ALP in Sepsis

TFEB is an important pharmacological target in neurodegenerative, metabolic and malignant diseases, which was comprehensively summarized by previous literatures (Martini-Stoica et al., 2016; Raben and Puertollano, 2016). Meanwhile, recent studies have increasingly focused on its putative roles in immune modulation and organ protection, thereby implicating a close relationship with the development and outcomes of sepsis (Irazoqui, 2020; Zhu et al., 2021) (Figure 1).

Modulation of the Immune Response

The cellular machinery of autophagy is featured by its ability to eliminate intracellular microbes in a process known as xenophagy (Deretic, 2021). In innate immune cells, TFEB is activated downstream of a phagocytosis event or can be stimulated by lipopolysaccharide (LPS) or interferon (IFN)-γ, thereby enhancing autophagy and lysosomal degradation and promoting the antimicrobial responses against intracellular pathogens (Kumar et al., 2020). It has also been demonstrated the antimicrobial activity is recovered through autophagy activation by overexpression of TFEB in sirtuin-3 KO macrophages (Kim et al., 2019). Of note, the membrane penetrating Mycobacterium tuberculosis was shown to repress the expression of Tfeb and inhibit autophagy in macrophages to support intracellular replication, implicating an underlying mechanism that disrupts xenophagy in sepsis (Ouimet et al., 2016). This may offer an alternative strategy for eliminating pathogens during sepsis by modulating the activity of TFEB.

The control of inflammation is another prominent effect of TFEB in sepsis. Several recent reviews have highlighted the functions of TFEB in modulating innate immunity and inflammation with wide diversity (Brady et al., 2018; Irazoqui, 2020). TFEB was shown to be rapidly activated in a Caenorhabditis elegans model following Staphylococcus aureus infection; this process drove the expression of proinflammatory cytokines and chemokines (Visvikis et al., 2014). The activation of TFEB has also been shown to induce M1 macrophage polarization, thus causing transition into a proinflammatory state (Pastore et al., 2016). In contrast, TFEB may exert anti-inflammatory effects indirectly by activating autophagy and lysosomes to suppress the activation of inflammasomes and the excessive production of proinflammatory cytokines (Irazoqui, 2020). TFEB also regulates lipid metabolism and restores homeostasis in the endoplasmic reticulum, thereby controlling the resolution of inflammation (Irazoqui, 2020). Therefore, TFEB may inhibit inflammation in sepsis via several different mechanisms.

Immunosuppression is also a well-recognized feature of sepsis and is characterized by monocytes/macrophage tolerance, T cell exhaustion, impaired antigen presentation and increased susceptibility to opportunistic nosocomial infection (Cecconi et al., 2018). Induction of the ALP may reverse these phenotypes (Venet and Monneret, 2018). Although there has been no direct report relating to TFEB and immunosuppression during sepsis, existing studies have demonstrated that TFEB intensifies immune responses by promoting antigen presentation in dendritic cells (Samie and Cresswell, 2015), resetting suppressive tumor-associated macrophages towards the M1 phenotype (Chen et al., 2018), reversing B cell senescence (Zhang et al., 2019), and by enhancing T cell immunity (Jin et al., 2021). Furthermore, the activation of TFEB mediates high levels of glucose-induced interleukin-1β secretion in human monocytic cells (Tseng et al., 2017) and rescues the dysfunctional lysosomal phenotype to improve viability in macrophages upon co-treatment with palmitate and LPS (Schilling et al., 2013). These findings also suggest that TFEB may reverse immunosuppression by restoring cellular response and preventing cell death.

Organ Protection

The TFEB dependent ALP is fundamental for organ protection in sepsis by reducing tissue inflammation, alleviating oxidative stress and controlling metabolic process (Irazoqui, 2020). The overexpression of TFEB increases the autophagy levels in major organs and protects against LPS induce acute lung injury (Liu et al., 2019) or inflammatory liver injury and pancreatitis (Chao et al., 2018; Wang et al., 2019). Moreover, the pharmacological activation of TFEB by extrinsic stimuli or intrinsic signaling molecules is known to protect against septic liver injury, acute kidney injury (Li D. et al., 2021), and cardiac dysfunction (Unuma et al., 2013).

The Pharmacological Application of TFEB Activators as a Therapeutic Option for Sepsis

Although the overexpression of TFEB has been investigated in cells and experimental rodents to evaluate its ability to activate the ALP, the pharmacological modulation of TFEB by means of activators is more desirable for therapeutic applications in the short term. For example, recent research has reported that small molecules and biomacromolecules (e.g., microRNAs (miRNA), polysaccharides and peptides) can modulate the ALP by activating TFEB (Xu H. et al., 2020; Chen et al., 2021). These activators have been categorized according to the pharmacological mechanisms by which they regulate TFEB. Here, we summarize recent findings related to the therapeutic implications of some of these molecules and biomacromolecules for sepsis.

TFEB Activators and Their Pharmacological Targets

A variety of small compounds have been demonstrated to either increase the levels of TFEB or promote its activation at the post-translational level. The first target is the expression or synthesis of TFEB, thus leading to increased intracellular levels of TFEB. For example, peroxisome proliferator-activated receptor α (PPAR-α) agonists (e.g., GW7647 and cinnamic acid) and other natural compounds (e.g., genistein, ATRA, GDC-0941, and luteolin) have been shown to upregulate the mRNA expression of TFEB, thereby activating the ALP and enhancing the cellular clearance machinery (Enzenmuller et al., 2013; Moskot et al., 2014; Kim et al., 2017; Chandra et al., 2019; Xu H. et al., 2020; Orfali et al., 2020). Moreover, polyamines (e.g., spermidine) have been shown to activate translation factor eIF5A by inducing its hypusination, thereby promoting the synthesis of TFEB and the upregulation of autophagy in immune cells (Puleston et al., 2019; Zhang et al., 2019). The second target is the regulation of phosphorylation/dephosphorylation and translocation of TFEB in either a direct or indirect manner. For example, curcumin and analogues (e.g., curcumin-C1) are direct modulators that bind to the N terminus of TFEB, weaken TFEB-YWHA interaction, and promote the nuclear translocation of TFEB (Song et al., 2016; Zhang et al., 2016). The translocation of TFEB can be enhanced by the induction of dephosphorylation or the translation of TFEB in a manner that is mediated indirectly by mTOR inhibitors, AMPK/SIRT1 activators, ROS inducers, Akt inhibitors and Ca2+-calcineurin modulators (described in detail in Table 1).

TABLE 1
www.frontiersin.org

TABLE 1. Small-molecular TFEB activators and their pharmacological targets.

In addition to small molecular activators, other larger biomolecules, such as polysaccharides, peptides and miRNAs, can also regulate the activity of TFEB. A few recent studies have reported that polysaccharides (e.g., tea polysaccharide and cyclodextrin) and peptides (e.g., apelin and cell-penetrating peptides) can activate TFEB and enhance the ALP process by inhibiting mTOR activity (Zhou et al., 2021) or promoting TFEB translocation (Song et al., 2014; Jiang et al., 2020; Kondow-Mcconaghy et al., 2020). In contrast, miRNAs are predominantly negative regulators of TFEB expression or its activity to promote autophagy and lysosome biogenesis. For example, a recent review article reported that specific miRNAs, such as the miR-128 and miR-29 families, are predicted to bind to the 3’ UTRs of TFEB mRNA, thereby downregulating its expression at the post-transcriptional levels (Cora et al., 2021). Other miRNAs such as miR-30b-5p (Guo et al., 2021) and miR-33 (Ouimet et al., 2016) have also been demonstrated to disrupt TFEB activation and inhibit autophagy by either inhibiting its transcriptional activity or interfering with its nuclear translocation. Therefore, downregulating these inhibitory non-coding RNAs may provide alternative approaches to activating the TFEB dependent ALP.

Therapeutic Implications of TFEB Activators in Sepsis

Given that the impairment of ALP in sepsis results in unresolved infection, inflammation, organ injury, and immunodysfunction, researchers have begun to investigate TFEB modulators in preclinical models to examine their therapeutic efficacy in ameliorating sepsis-induced dysfunction by promoting autophagy and lysosomal functions.

TFEB-dependent xenophagy is critical for antimicrobial defense and is fundamental for the prevention and control of sepsis. TFEB-activating agents, such as trehalose (Sharma et al., 2021), bedaquiline (Giraud-Gatineau et al., 2020), and acacetin (Ammanathan et al., 2020), can upregulate autophagy- and lysosome-associated genes, thus resulting in enhanced bactericidal activity in macrophages or mice infected by intracellular pathogens (e.g., Mycobacterium tuberculosis and Salmonella typhimurium). It is notable that opportunistic pathogens, such as mycobacterial species, can commonly induce secondary infection in post-sepsis patients or trigger sepsis in patients who are immunocompromised. Moreover, pathogens like Mycobacterium tuberculosis inhibit autophagy and lysosomal function by inducing miR-33 dependent inactivation of TFEB (Ouimet et al., 2016). Therefore, TFEB activators may provide additional benefit in these circumstances.

The TFEB-dependent ALP is widely regarded as a critical pathway that can control excessive inflammation and restore immune homeostasis during sepsis. Several recent studies have described pivotal immunomodulatory roles for TFEB activators in sepsis. The activation of TFEB by flavonoid compounds, such as naringenin and apigenin, has been shown to reduce inflammatory cytokines following an LPS challenge by either enhancing the degradation of intracellular cytokines via lysosome-dependent mechanisms (Jin et al., 2017) or by enhancing the control of autophagy (Li et al., 2017). Two recent studies reported that polyamines can promote the synthesis of TFEB and induce autophagy; this ability was successfully used to reverse immune senescence in B lymphocytes (Zhang et al., 2019) or to promote macrophage M2 polarization (Puleston et al., 2019). These findings further indicate that TFEB activators may also modulate the status of immune cells in addition to their anti-inflammatory activity via a common mechanism to activate the ALP.

TFEB activators have also been demonstrated to confer organ protection in sepsis. For example, licochalcone A, curcumin, and cobalt protoporphyrin, have been shown to alleviate liver injury (Lv et al., 2019), intestinal barrier injury (Cao et al., 2020), and septic insults in the heart (Unuma et al., 2013), induced by LPS challenge; these effects were all related to the ability of these TFEB activators to activate the ALP. Other non-conventional TFEB inducers, such as hydrogen rich saline (Fu et al., 2020) and carbon monoxide (Kim et al., 2018), have been found to confer protection against lipopolysaccharide-induced acute injury or inflammatory liver injury, respectively. Furthermore, the activation of TFEB by mTORC1 inhibitors has been shown to rescue a mouse model from lethal pancreatitis (Wang et al., 2019) and chronic ethanol-induced liver injury (Chao et al., 2018); these effects were closely associated with the onset of sepsis or during sepsis and worsened clinical outcomes.

Conclusion and Perspectives

A multitude of studies have aimed to explore the therapeutic efficacy of TFEB and the TFEB-dependent ALP pathway in sepsis via the pharmacological modulation of TFEB activation. This research has led to encouraging outcomes in preclinical models of sepsis or diseases associated with sepsis, including antimicrobial, anti-inflammatory, and organ protective activities. In addition, lower nuclear levels of TFEB have been detected in patients with alcohol-induced hepatitis or acute pancreatitis. These results further implicate the significance of activating TFEB and the TFEB-dependent ALP in clinical conditions associated with sepsis (Chao et al., 2018; Wang et al., 2019). However, despite these encouraging findings, there are still several concerns that need to be addressed in future research activities.

First, the kinetics and specificity of TFEB in sepsis should be investigated. Both the activity of TFEB and the status of autophagy are altered during the progression of sepsis. Therefore, further investigations are needed to evaluate time-dependent changes in the expression and activity of TFEB in sepsis; these studies are vital if we are to use TFEB activators appropriately for therapeutic intervention. In addition, it is known that the dephosphorylation/phosphorylation balance of TFEB is central for its regulation. Multiple pathways, such as mTORC1 and Ca2+/calcineurin, target the phosphorylating sites on TFEB. However, these mechanisms are identified in different cells. Further research is needed to find the specific upstream regulatory pathways in each cell type and determining their function of modulating TFEB in sepsis (Pan et al., 2017; Pan et al., 2020). Moreover, most existing studies investigated the activation of TFEB by assessing the efficacy of TFEB activators in cell lines or homogenates from a single organ. The entire tissue- and organ-specific profiles of TFEB and the TFEB-dependent ALP in sepsis have yet to be elucidated in detail. In this regard, it is important that we investigate the overall activity of TFEB and the TFEB-dependent ALP in major organs (e.g., liver, lung, spleen, kidney and intestine) or specific cells (e.g., immune cells, hepatocytes and endothelial cells). It is also important to compare the involvement of TFEB and the TFEB-dependent ALP in organ-specific functions (e.g., hepatic metabolic regulation, cardiac and renal protection, and immunomodulation) to determine their influences on the outcomes of sepsis.

Second, the activation of the TFEB-dependent ALP can be triggered by nutritional deficiency, infection, and other stressful conditions, that are commonly observed in sepsis. Thus, future studies need to investigate whether TFEB activators can synergize or counteract with these environmental factors in the regulation of TFEB and the ALP. Prolonged deficiency or dysregulation in sepsis is increasingly regarded as an epigenetic consequence (van der Poll et al., 2017) while post-translational mechanisms may also be key to the activation of TFEB and how the ALP is affected over the long term. Therefore, further studies should focus on the epigenetic regulation of TFEB and identify post-translational mechanisms (e.g., miRNAs, long non-coding RNA (lncRNAs) and new protein modifications) that may exert functional roles during sepsis.

Third, the current safety and efficacy data for TFEB activators are not convincing and require further validation. For example, the efficacy of TFEB activators should be verified in more standardized models of sepsis (e.g., the cecal ligation and puncture model) instead of endotoxemia models or otherwise tested in clinical settings. Moreover, most TFEB activators target the upstream regulators of TFEB, such as mTORC1 and Ca2+/calcineurin; these are also involved in other intracellular events (Song et al., 2021). Therefore, more direct TFEB activators (e.g., curcumin-c1) need to be developed in future studies as these may increase functional specificity and reduce side effects. In addition, we must consider that the activation of the TFEB-dependent ALP may induce tumorigenesis, a disease condition that is frequently concurrent with sepsis (Levine and Kroemer, 2019). Therefore, it is important that we evaluate the relative risks and benefits before the widespread therapeutic application of TFEB activators by investigating their consequences in septic conditions concomitant with tumor.

Author Contributions

XL, XZ and YL reviewed literatures, wrote the manuscript and prepared figures and tables. QC reviewed literature and help to prepare figures. JZ and HZ conceived the review article and made substantial revision before submission. All authors contributed to the article and approved the submission.

Funding

This work was supported by grants from the National Natural Science Foundation (81873955, 81772137, 81803394).

Conflict of Interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher’s Note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

References

Ammanathan, V., Mishra, P., Chavalmane, A. K., Muthusamy, S., Jadhav, V., Siddamadappa, C., et al. (2020). Restriction of Intracellular Salmonella Replication by Restoring TFEB-Mediated Xenophagy. Autophagy 16 (9), 1584–1597. doi:10.1080/15548627.2019.1689770

PubMed Abstract | CrossRef Full Text | Google Scholar

Baker, B., Geng, S., Chen, K., Diao, N., Yuan, R., Xu, X., et al. (2015). Alteration of Lysosome Fusion and Low-Grade Inflammation Mediated by Super-low-dose Endotoxin. J. Biol. Chem. 290 (10), 6670–6678. doi:10.1074/jbc.M114.611442

CrossRef Full Text | Google Scholar

Ballabio, A., and Bonifacino, J. S. (2020). Lysosomes as Dynamic Regulators of Cell and Organismal Homeostasis. Nat. Rev. Mol. Cel Biol 21 (2), 101–118. doi:10.1038/s41580-019-0185-4

CrossRef Full Text | Google Scholar

Bao, J., Zheng, L., Zhang, Q., Li, X., Zhang, X., Li, Z., et al. (2016). Deacetylation of TFEB Promotes Fibrillar Aβ Degradation by Upregulating Lysosomal Biogenesis in Microglia. Protein Cell 7 (6), 417–433. doi:10.1007/s13238-016-0269-2

PubMed Abstract | CrossRef Full Text | Google Scholar

Brady, O. A., Martina, J. A., and Puertollano, R. (2018). Emerging Roles for TFEB in the Immune Response and Inflammation. Autophagy 14 (2), 181–189. doi:10.1080/15548627.2017.1313943

PubMed Abstract | CrossRef Full Text | Google Scholar

Cao, S., Wang, C., Yan, J., Li, X., Wen, J., and Hu, C. (2020). Curcumin Ameliorates Oxidative Stress-Induced Intestinal Barrier Injury and Mitochondrial Damage by Promoting Parkin Dependent Mitophagy through AMPK-TFEB Signal Pathway. Free Radic. Biol. Med. 147, 8–22. doi:10.1016/j.freeradbiomed.2019.12.004

PubMed Abstract | CrossRef Full Text | Google Scholar

Cecconi, M., Evans, L., Levy, M., and Rhodes, A. (2018). Sepsis and Septic Shock. Lancet 392 (10141), 75–87. doi:10.1016/S0140-6736(18)30696-2

PubMed Abstract | CrossRef Full Text | Google Scholar

Chandra, S., Roy, A., Jana, M., and Pahan, K. (2019). Cinnamic Acid Activates PPARα to Stimulate Lysosomal Biogenesis and Lower Amyloid Plaque Pathology in an Alzheimer's Disease Mouse Model. Neurobiol. Dis. 124, 379–395. doi:10.1016/j.nbd.2018.12.007

PubMed Abstract | CrossRef Full Text | Google Scholar

Chao, X., Wang, S., Zhao, K., Li, Y., Williams, J. A., Li, T., et al. (2018). Impaired TFEB-Mediated Lysosome Biogenesis and Autophagy Promote Chronic Ethanol-Induced Liver Injury and Steatosis in Mice. Gastroenterology 155 (3), 865–e12. e12. doi:10.1053/j.gastro.2018.05.027

PubMed Abstract | CrossRef Full Text | Google Scholar

Chen, D., Xie, J., Fiskesund, R., Dong, W., Liang, X., Lv, J., et al. (2018). Chloroquine Modulates Antitumor Immune Response by Resetting Tumor-Associated Macrophages toward M1 Phenotype. Nat. Commun. 9 (1), 873. doi:10.1038/s41467-018-03225-9

PubMed Abstract | CrossRef Full Text | Google Scholar

Chen, G., Xie, W., Nah, J., Sauvat, A., Liu, P., Pietrocola, F., et al. (2019a). 3,4-Dimethoxychalcone Induces Autophagy through Activation of the Transcription Factors TFE3 and TFEB. EMBO Mol. Med. 11 (11), e10469. doi:10.15252/emmm.201910469

PubMed Abstract | CrossRef Full Text | Google Scholar

Chen, J., Min, S., Xie, F., Yang, J., and Wang, X. (2019b). Enhancing Autophagy Protects against Sepsis-Induced Neuromuscular Dysfunction Associated with Qualitative Changes to Acetylcholine Receptors. Shock 52 (1), 111–121. doi:10.1097/SHK.0000000000001189

PubMed Abstract | CrossRef Full Text | Google Scholar

Chen, M., Dai, Y., Liu, S., Fan, Y., Ding, Z., and Li, D. (2021). TFEB Biology and Agonists at a Glance. Cells 10 (2), 333. doi:10.3390/cells10020333

PubMed Abstract | CrossRef Full Text | Google Scholar

Chien, W. S., Chen, Y. H., Chiang, P. C., Hsiao, H. W., Chuang, S. M., Lue, S. I., et al. (2011). Suppression of Autophagy in Rat Liver at Late Stage of Polymicrobial Sepsis. Shock 35 (5), 506–511. doi:10.1097/SHK.0b013e31820b2f05

PubMed Abstract | CrossRef Full Text | Google Scholar

Corà, D., Bussolino, F., and Doronzo, G. (2021). TFEB Signalling-Related MicroRNAs and Autophagy. Biomolecules 11 (7), 985. doi:10.3390/biom11070985

PubMed Abstract | CrossRef Full Text | Google Scholar

Deretic, V. (2021). Autophagy in Inflammation, Infection, and Immunometabolism. Immunity 54 (3), 437–453. doi:10.1016/j.immuni.2021.01.018

PubMed Abstract | CrossRef Full Text | Google Scholar

Enzenmüller, S., Gonzalez, P., Karpel-Massler, G., Debatin, K. M., and Fulda, S. (2013). GDC-0941 Enhances the Lysosomal Compartment via TFEB and Primes Glioblastoma Cells to Lysosomal Membrane Permeabilization and Cell Death. Cancer Lett. 329 (1), 27–36. doi:10.1016/j.canlet.2012.09.007

PubMed Abstract | CrossRef Full Text | Google Scholar

Fang, F., Ge, Q., Li, R., Lv, J., Zhang, Y., Feng, A., et al. (2020a). LPS Restores Protective Immunity in Macrophages against Mycobacterium tuberculosis via Autophagy. Mol. Immunol. 124, 18–24. doi:10.1016/j.molimm.2020.05.001

PubMed Abstract | CrossRef Full Text | Google Scholar

Fang, Y., Ji, L., Zhu, C., Xiao, Y., Zhang, J., Lu, J., et al. (2020b). Liraglutide Alleviates Hepatic Steatosis by Activating the TFEB-Regulated Autophagy-Lysosomal Pathway. Front Cel Dev Biol 8, 602574. doi:10.3389/fcell.2020.602574

CrossRef Full Text | Google Scholar

Fu, Z., Zhang, Z., Wu, X., and Zhang, J. (2020). Hydrogen-Rich Saline Inhibits Lipopolysaccharide-Induced Acute Lung Injury and Endothelial Dysfunction by Regulating Autophagy through mTOR/TFEB Signaling Pathway. Biomed. Res. Int. 2020, 9121894. doi:10.1155/2020/9121894

PubMed Abstract | CrossRef Full Text | Google Scholar

Gao, L., Li, X., Meng, S., Ma, T., Wan, L., and Xu, S. (2020). Chlorogenic Acid Alleviates Aβ25-35-Induced Autophagy and Cognitive Impairment via the mTOR/TFEB Signaling Pathway. Drug Des. Devel Ther. 14, 1705–1716. doi:10.2147/DDDT.S235969

PubMed Abstract | CrossRef Full Text | Google Scholar

Germic, N., Frangez, Z., Yousefi, S., and Simon, H. U. (2019). Regulation of the Innate Immune System by Autophagy: Neutrophils, Eosinophils, Mast Cells, NK Cells. Cell Death Differ 26 (4), 703–714. doi:10.1038/s41418-019-0295-8

PubMed Abstract | CrossRef Full Text | Google Scholar

Giraud-Gatineau, A., Coya, J. M., Maure, A., Biton, A., Thomson, M., Bernard, E. M., et al. (2020). The Antibiotic Bedaquiline Activates Host Macrophage Innate Immune Resistance to Bacterial Infection. eLife 9, e55692. doi:10.7554/eLife.55692

PubMed Abstract | CrossRef Full Text | Google Scholar

Guo, H., Pu, M., Tai, Y., Chen, Y., Lu, H., Qiao, J., et al. (2021). Nuclear miR-30b-5p Suppresses TFEB-Mediated Lysosomal Biogenesis and Autophagy. Cel Death Differ 28 (1), 320–336. doi:10.1038/s41418-020-0602-4

CrossRef Full Text | Google Scholar

Huang, J., Wang, X., Zhu, Y., Li, Z., Zhu, Y. T., Wu, J. C., et al. (2019). Exercise Activates Lysosomal Function in the Brain through AMPK-SIRT1-TFEB Pathway. CNS Neurosci. Ther. 25 (6), 796–807. doi:10.1111/cns.13114

PubMed Abstract | CrossRef Full Text | Google Scholar

Huang, W., Liu, D. W., Wang, G. J., Zhang, H. M., Zhou, G. S., Liu, J. J., et al. (2021). Serum Microtubule-Associated Protein Light Chain 3 Type II Levels Correlate with Aggravation and Multi-Organ Dysfunction in Septic Patients. Chin. Med. J. (Engl) 134 (14), 1732–1734. doi:10.1097/CM9.0000000000001640

CrossRef Full Text | Google Scholar

Huang, Y., Chen, Y., Shaw, A. M., Goldfine, H., Tian, J., and Cai, J. (2018). Enhancing TFEB-Mediated Cellular Degradation Pathways by the mTORC1 Inhibitor Quercetin. Oxid. Med. Cel. Longev. 2018, 5073420. doi:10.1155/2018/5073420

PubMed Abstract | CrossRef Full Text | Google Scholar

Irazoqui, J. E. (2020). Key Roles of MiT Transcription Factors in Innate Immunity and Inflammation. Trends Immunol. 41 (2), 157–171. doi:10.1016/j.it.2019.12.003

PubMed Abstract | CrossRef Full Text | Google Scholar

Jia, L., Wang, Y., Wang, Y., Ma, Y., Shen, J., Fu, Z., et al. (2018). Heme Oxygenase-1 in Macrophages Drives Septic Cardiac Dysfunction via Suppressing Lysosomal Degradation of Inducible Nitric Oxide Synthase. Circ. Res. 122 (11), 1532–1544. doi:10.1161/CIRCRESAHA.118.312910

PubMed Abstract | CrossRef Full Text | Google Scholar

Jiang, W., Zhao, P., and Zhang, X. (2020). Apelin Promotes ECM Synthesis by Enhancing Autophagy Flux via TFEB in Human Degenerative NP Cells under Oxidative Stress. Biomed. Res. Int. 2020, 4897170. doi:10.1155/2020/4897170

PubMed Abstract | CrossRef Full Text | Google Scholar

Jin, J., Kim, C., Xia, Q., Gould, T. M., Cao, W., Zhang, H., et al. (2021). Activation of mTORC1 at Late Endosomes Misdirects T Cell Fate Decision in Older Individuals. Sci. Immunol. 6 (60), eabg0791. doi:10.1126/sciimmunol.abg0791

PubMed Abstract | CrossRef Full Text | Google Scholar

Jin, L., Zeng, W., Zhang, F., Zhang, C., and Liang, W. (2017). Naringenin Ameliorates Acute Inflammation by Regulating Intracellular Cytokine Degradation. J. Immunol. 199 (10), 3466–3477. doi:10.4049/jimmunol.1602016

PubMed Abstract | CrossRef Full Text | Google Scholar

Kim, H. J., Joe, Y., Rah, S. Y., Kim, S. K., Park, S. U., Park, J., et al. (2018). Carbon Monoxide-Induced TFEB Nuclear Translocation Enhances Mitophagy/mitochondrial Biogenesis in Hepatocytes and Ameliorates Inflammatory Liver Injury. Cell Death Dis 9 (11), 1060. doi:10.1038/s41419-018-1112-x

PubMed Abstract | CrossRef Full Text | Google Scholar

Kim, T. S., Jin, Y. B., Kim, Y. S., Kim, S., Kim, J. K., Lee, H. M., et al. (2019). SIRT3 Promotes Antimycobacterial Defenses by Coordinating Mitochondrial and Autophagic Functions. Autophagy 15 (8), 1356–1375. doi:10.1080/15548627.2019.1582743

PubMed Abstract | CrossRef Full Text | Google Scholar

Kim, Y. S., Lee, H. M., Kim, J. K., Yang, C. S., Kim, T. S., Jung, M., et al. (2017). PPAR-α Activation Mediates Innate Host Defense through Induction of TFEB and Lipid Catabolism. J. Immunol. 198 (8), 3283–3295. doi:10.4049/jimmunol.1601920

PubMed Abstract | CrossRef Full Text | Google Scholar

Kondow-Mcconaghy, H. M., Muthukrishnan, N., Erazo-Oliveras, A., Najjar, K., Juliano, R. L., and Pellois, J. P. (2020). Impact of the Endosomal Escape Activity of Cell-Penetrating Peptides on the Endocytic Pathway. ACS Chem. Biol. 15 (9), 2355–2363. doi:10.1021/acschembio.0c00319

PubMed Abstract | CrossRef Full Text | Google Scholar

Kumar, S., Jain, A., Choi, S. W., da Silva, G. P. D., Allers, L., Mudd, M. H., et al. (2020). Mammalian Atg8 Proteins and the Autophagy Factor IRGM Control mTOR and TFEB at a Regulatory Node Critical for Responses to Pathogens. Nat. Cel Biol. 22 (8), 973–985. doi:10.1038/s41556-020-0549-1

PubMed Abstract | CrossRef Full Text | Google Scholar

Lee, J. W., Nam, H., Kim, L. E., Jeon, Y., Min, H., Ha, S., et al. (2019). TLR4 (Toll-like Receptor 4) Activation Suppresses Autophagy through Inhibition of FOXO3 and Impairs Phagocytic Capacity of Microglia. Autophagy 15 (5), 753–770. doi:10.1080/15548627.2018.1556946

PubMed Abstract | CrossRef Full Text | Google Scholar

Lee, S., Lee, S. J., Coronata, A. A., Fredenburgh, L. E., Chung, S. W., Perrella, M. A., et al. (2014). Carbon Monoxide Confers protection in Sepsis by Enhancing Beclin 1-dependent Autophagy and Phagocytosis. Antioxid. Redox Signal. 20 (3), 432–442. doi:10.1089/ars.2013.5368

PubMed Abstract | CrossRef Full Text | Google Scholar

Levine, B., and Kroemer, G. (2019). Biological Functions of Autophagy Genes: A Disease Perspective. Cell 176 (1-2), 11–42. doi:10.1016/j.cell.2018.09.048

PubMed Abstract | CrossRef Full Text | Google Scholar

Li, D., Shao, R., Wang, N., Zhou, N., Du, K., Shi, J., et al. (2021a). Sulforaphane Activates a Lysosome-dependent Transcriptional Program to Mitigate Oxidative Stress. Autophagy 17 (4), 872–887. doi:10.1080/15548627.2020.1739442

PubMed Abstract | CrossRef Full Text | Google Scholar

Li, F., Lang, F., Zhang, H., Xu, L., Wang, Y., Zhai, C., et al. (2017). Apigenin Alleviates Endotoxin-Induced Myocardial Toxicity by Modulating Inflammation, Oxidative Stress, and Autophagy. Oxid. Med. Cel. Longev. 2017, 2302896. doi:10.1155/2017/2302896

PubMed Abstract | CrossRef Full Text | Google Scholar

Li, R., Zhao, X., Zhang, S., Dong, W., Zhang, L., Chen, Y., et al. (2021b). RIP3 Impedes Transcription Factor EB to Suppress Autophagic Degradation in Septic Acute Kidney Injury. Cel Death Dis 12 (6), 593. doi:10.1038/s41419-021-03865-8

CrossRef Full Text | Google Scholar

Lin, C. W., Lo, S., Perng, D. S., Wu, D. B., Lee, P. H., Chang, Y. F., et al. (2014). Complete Activation of Autophagic Process Attenuates Liver Injury and Improves Survival in Septic Mice. Shock 41 (3), 241–249. doi:10.1097/SHK.0000000000000111

PubMed Abstract | CrossRef Full Text | Google Scholar

Liu, Q., Wu, J., Zhang, X., Li, X., Wu, X., Zhao, Y., et al. (2021). Circulating Mitochondrial DNA-Triggered Autophagy Dysfunction via STING Underlies Sepsis-Related Acute Lung Injury. Cel Death Dis 12 (7), 673. doi:10.1038/s41419-021-03961-9

CrossRef Full Text | Google Scholar

Liu, W., Li, C. C., Lu, X., Bo, L. Y., and Jin, F. G. (2019). Overexpression of Transcription Factor EB Regulates Mitochondrial Autophagy to Protect Lipopolysaccharide-Induced Acute Lung Injury. Chin. Med. J. (Engl) 132 (11), 1298–1304. doi:10.1097/CM9.0000000000000243

CrossRef Full Text | Google Scholar

Lv, H., Yang, H., Wang, Z., Feng, H., Deng, X., Cheng, G., et al. (2019). Nrf2 Signaling and Autophagy Are Complementary in Protecting Lipopolysaccharide/d-Galactosamine-Induced Acute Liver Injury by Licochalcone A. Cel Death Dis 10 (4), 313. doi:10.1038/s41419-019-1543-z

CrossRef Full Text | Google Scholar

Martini-Stoica, H., Xu, Y., Ballabio, A., and Zheng, H. (2016). The Autophagy-Lysosomal Pathway in Neurodegeneration: A TFEB Perspective. Trends Neurosci. 39 (4), 221–234. doi:10.1016/j.tins.2016.02.002

PubMed Abstract | CrossRef Full Text | Google Scholar

Medina, D. L., Fraldi, A., Bouche, V., Annunziata, F., Mansueto, G., Spampanato, C., et al. (2011). Transcriptional Activation of Lysosomal Exocytosis Promotes Cellular Clearance. Dev. Cel. 21 (3), 421–430. doi:10.1016/j.devcel.2011.07.016

CrossRef Full Text | Google Scholar

Mo, Y., Lou, Y., Zhang, A., Zhang, J., Zhu, C., Zheng, B., et al. (20182018). PICK1 Deficiency Induces Autophagy Dysfunction via Lysosomal Impairment and Amplifies Sepsis-Induced Acute Lung Injury. Mediators Inflamm. 2018, 6757368. doi:10.1155/2018/6757368

PubMed Abstract | CrossRef Full Text | Google Scholar

Moskot, M., Montefusco, S., Jakóbkiewicz-Banecka, J., Mozolewski, P., Węgrzyn, A., Di Bernardo, D., et al. (2014). The Phytoestrogen Genistein Modulates Lysosomal Metabolism and Transcription Factor EB (TFEB) Activation. J. Biol. Chem. 289 (24), 17054–17069. doi:10.1074/jbc.M114.555300

CrossRef Full Text | Google Scholar

Nikouee, A., Kim, M., Ding, X., Sun, Y., and Zang, Q. S. (2021). Beclin-1-Dependent Autophagy Improves Outcomes of Pneumonia-Induced Sepsis. Front Cel Infect Microbiol 11, 706637. doi:10.3389/fcimb.2021.706637

CrossRef Full Text | Google Scholar

Oami, T., Watanabe, E., Hatano, M., Sunahara, S., Fujimura, L., Sakamoto, A., et al. (2017). Suppression of T Cell Autophagy Results in Decreased Viability and Function of T Cells through Accelerated Apoptosis in a Murine Sepsis Model. Crit. Care Med. 45 (1), e77–e85. doi:10.1097/CCM.0000000000002016

PubMed Abstract | CrossRef Full Text | Google Scholar

Oami, T., Watanabe, E., Hatano, M., Teratake, Y., Fujimura, L., Sakamoto, A., et al. (2018). Blocking Liver Autophagy Accelerates Apoptosis and Mitochondrial Injury in Hepatocytes and Reduces Time to Mortality in a Murine Sepsis Model. Shock 50 (4), 427–434. doi:10.1097/SHK.0000000000001040

PubMed Abstract | CrossRef Full Text | Google Scholar

Orfali, N., O'Donovan, T. R., Cahill, M. R., Benjamin, D., Nanus, D. M., Mckenna, S. L., et al. (2020). All-trans Retinoic Acid (ATRA)-induced TFEB Expression Is Required for Myeloid Differentiation in Acute Promyelocytic Leukemia (APL). Eur. J. Haematol. 104 (3), 236–250. doi:10.1111/ejh.13367

CrossRef Full Text | Google Scholar

Ouimet, M., Koster, S., Sakowski, E., Ramkhelawon, B., van Solingen, C., Oldebeken, S., et al. (2016). Mycobacterium tuberculosis Induces the miR-33 Locus to Reprogram Autophagy and Host Lipid Metabolism. Nat. Immunol. 17 (6), 677–686. doi:10.1038/ni.3434

PubMed Abstract | CrossRef Full Text | Google Scholar

Ouyang, X., Becker, E., Bone, N. B., Johnson, M. S., Craver, J., Zong, W.-X., et al. (2021). ZKSCAN3 in Severe Bacterial Lung Infection and Sepsis-Induced Immunosuppression. Lab. Invest. 101, 1467–1474. doi:10.1038/s41374-021-00660-z

PubMed Abstract | CrossRef Full Text | Google Scholar

Palmieri, M., Impey, S., Kang, H., di Ronza, A., Pelz, C., Sardiello, M., et al. (2011). Characterization of the CLEAR Network Reveals an Integrated Control of Cellular Clearance Pathways. Hum. Mol. Genet. 20 (19), 3852–3866. doi:10.1093/hmg/ddr306

PubMed Abstract | CrossRef Full Text | Google Scholar

Pan, B., Lewno, M. T., Wu, P., and Wang, X. (2019). Highly Dynamic Changes in the Activity and Regulation of Macroautophagy in Hearts Subjected to Increased Proteotoxic Stress. Front. Physiol. 10, 758. doi:10.3389/fphys.2019.00758

PubMed Abstract | CrossRef Full Text | Google Scholar

Pan, B., Li, J., Parajuli, N., Tian, Z., Wu, P., Lewno, M. T., et al. (2020). The Calcineurin-TFEB-P62 Pathway Mediates the Activation of Cardiac Macroautophagy by Proteasomal Malfunction. Circ. Res. 127 (4), 502–518. doi:10.1161/CIRCRESAHA.119.316007

PubMed Abstract | CrossRef Full Text | Google Scholar

Pan, B., Zhang, H., Cui, T., and Wang, X. (2017). TFEB Activation Protects against Cardiac Proteotoxicity via Increasing Autophagic Flux. J. Mol. Cel. Cardiol. 113, 51–62. doi:10.1016/j.yjmcc.2017.10.003

CrossRef Full Text | Google Scholar

Pastore, N., Brady, O. A., Diab, H. I., Martina, J. A., Sun, L., Huynh, T., et al. (2016). TFEB and TFE3 Cooperate in the Regulation of the Innate Immune Response in Activated Macrophages. Autophagy 12 (8), 1240–1258. doi:10.1080/15548627.2016.1179405

PubMed Abstract | CrossRef Full Text | Google Scholar

Puleston, D. J., Buck, M. D., Klein Geltink, R. I., Kyle, R. L., Caputa, G., O'Sullivan, D., et al. (2019). Polyamines and eIF5A Hypusination Modulate Mitochondrial Respiration and Macrophage Activation. Cell Metab 30 (2), 352–e8. e8. doi:10.1016/j.cmet.2019.05.003

PubMed Abstract | CrossRef Full Text | Google Scholar

Raben, N., and Puertollano, R. (2016). TFEB and TFE3: Linking Lysosomes to Cellular Adaptation to Stress. Annu. Rev. Cel Dev Biol 32, 255–278. doi:10.1146/annurev-cellbio-111315-125407

PubMed Abstract | CrossRef Full Text | Google Scholar

Rudd, K. E., Johnson, S. C., Agesa, K. M., Shackelford, K. A., Tsoi, D., Kievlan, D. R., et al. (2020). Global, Regional, and National Sepsis Incidence and Mortality, 1990-2017: Analysis for the Global Burden of Disease Study. Lancet 395 (10219), 200–211. doi:10.1016/S0140-6736(19)32989-7

PubMed Abstract | CrossRef Full Text | Google Scholar

Samie, M., and Cresswell, P. (2015). The Transcription Factor TFEB Acts as a Molecular Switch that Regulates Exogenous Antigen-Presentation Pathways. Nat. Immunol. 16 (7), 729–736. doi:10.1038/ni.3196

PubMed Abstract | CrossRef Full Text | Google Scholar

Sardiello, M., Palmieri, M., di Ronza, A., Medina, D. L., Valenza, M., Gennarino, V. A., et al. (2009). A Gene Network Regulating Lysosomal Biogenesis and Function. Science 325 (5939), 473–477. doi:10.1126/science.1174447

PubMed Abstract | CrossRef Full Text | Google Scholar

Schilling, J. D., Machkovech, H. M., He, L., Diwan, A., and Schaffer, J. E. (2013). TLR4 Activation under Lipotoxic Conditions Leads to Synergistic Macrophage Cell Death through a TRIF-dependent Pathway. J. Immunol. 190 (3), 1285–1296. doi:10.4049/jimmunol.1202208

CrossRef Full Text | Google Scholar

Settembre, C., Di Malta, C., Polito, V. A., Garcia Arencibia, M., Vetrini, F., Erdin, S., et al. (2011). TFEB Links Autophagy to Lysosomal Biogenesis. Science 332 (6036), 1429–1433. doi:10.1126/science.1204592

PubMed Abstract | CrossRef Full Text | Google Scholar

Sha, Y., Rao, L., Settembre, C., Ballabio, A., and Eissa, N. T. (2017). STUB1 Regulates TFEB-Induced Autophagy-Lysosome Pathway. EMBO J. 36 (17), 2544–2552. doi:10.15252/embj.201796699

PubMed Abstract | CrossRef Full Text | Google Scholar

Sharma, V., Makhdoomi, M., Singh, L., Kumar, P., Khan, N., Singh, S., et al. (2021). Trehalose Limits Opportunistic Mycobacterial Survival during HIV Co-infection by Reversing HIV-Mediated Autophagy Block. Autophagy 17 (2), 476–495. doi:10.1080/15548627.2020.1725374

PubMed Abstract | CrossRef Full Text | Google Scholar

Song, H., Feng, X., Zhang, H., Luo, Y., Huang, J., Lin, M., et al. (2019b). METTL3 and ALKBH5 Oppositely Regulate m6A Modification of TFEB mRNA, Which Dictates the Fate of Hypoxia/reoxygenation-Treated Cardiomyocytes. Autophagy 15 (8), 1419–1437. doi:10.1080/15548627.2019.1586246

PubMed Abstract | CrossRef Full Text | Google Scholar

Song, H. L., Demirev, A. V., Kim, N. Y., Kim, D. H., and Yoon, S. Y. (2019a). Ouabain Activates Transcription Factor EB and Exerts Neuroprotection in Models of Alzheimer's Disease. Mol. Cel. Neurosci. 95, 13–24. doi:10.1016/j.mcn.2018.12.007

CrossRef Full Text | Google Scholar

Song, J. X., Liu, J., Jiang, Y., Wang, Z. Y., and Li, M. (2021). Transcription Factor EB: An Emerging Drug Target for Neurodegenerative Disorders. Drug Discov. Today 26 (1), 164–172. doi:10.1016/j.drudis.2020.10.013

PubMed Abstract | CrossRef Full Text | Google Scholar

Song, J. X., Sun, Y. R., Peluso, I., Zeng, Y., Yu, X., Lu, J. H., et al. (2016). A Novel Curcumin Analog Binds to and Activates TFEB In Vitro and In Vivo Independent of MTOR Inhibition. Autophagy 12 (8), 1372–1389. doi:10.1080/15548627.2016.1179404

PubMed Abstract | CrossRef Full Text | Google Scholar

Song, W., Wang, F., Lotfi, P., Sardiello, M., and Segatori, L. (2014). 2-Hydroxypropyl-β-cyclodextrin Promotes Transcription Factor EB-Mediated Activation of Autophagy: Implications for Therapy. J. Biol. Chem. 289 (14), 10211–10222. doi:10.1074/jbc.M113.506246

CrossRef Full Text | Google Scholar

Song, W., Wang, F., Savini, M., Ake, A., di Ronza, A., Sardiello, M., et al. (2013). TFEB Regulates Lysosomal Proteostasis. Hum. Mol. Genet. 22 (10), 1994–2009. doi:10.1093/hmg/ddt052

PubMed Abstract | CrossRef Full Text | Google Scholar

Sun, Y., Yao, X., Zhang, Q. J., Zhu, M., Liu, Z. P., Ci, B., et al. (2018). Beclin-1-Dependent Autophagy Protects the Heart during Sepsis. Circulation 138 (20), 2247–2262. doi:10.1161/CIRCULATIONAHA.117.032821

PubMed Abstract | CrossRef Full Text | Google Scholar

Sunahara, S., Watanabe, E., Hatano, M., Swanson, P. E., Oami, T., Fujimura, L., et al. (2018). Influence of Autophagy on Acute Kidney Injury in a Murine Cecal Ligation and Puncture Sepsis Model. Sci. Rep. 8 (1), 1050. doi:10.1038/s41598-018-19350-w

PubMed Abstract | CrossRef Full Text | Google Scholar

Tseng, H. H. L., Vong, C. T., Kwan, Y. W., Lee, S. M., and Hoi, M. P. M. (2017). Lysosomal Ca2+ Signaling Regulates High Glucose-Mediated Interleukin-1β Secretion via Transcription Factor EB in Human Monocytic Cells. Front. Immunol. 8, 1161. doi:10.3389/fimmu.2017.01161

PubMed Abstract | CrossRef Full Text | Google Scholar

Unuma, K., Aki, T., Funakoshi, T., Yoshida, K., and Uemura, K. (2013). Cobalt Protoporphyrin Accelerates TFEB Activation and Lysosome Reformation during LPS-Induced Septic Insults in the Rat Heart. PLoS One 8 (2), e56526. doi:10.1371/journal.pone.0056526

PubMed Abstract | CrossRef Full Text | Google Scholar

van der Poll, T., van de Veerdonk, F. L., Scicluna, B. P., and Netea, M. G. (2017). The Immunopathology of Sepsis and Potential Therapeutic Targets. Nat. Rev. Immunol. 17 (7), 407–420. doi:10.1038/nri.2017.36

PubMed Abstract | CrossRef Full Text | Google Scholar

Venet, F., and Monneret, G. (2018). Advances in the Understanding and Treatment of Sepsis-Induced Immunosuppression. Nat. Rev. Nephrol. 14 (2), 121–137. doi:10.1038/nrneph.2017.165

PubMed Abstract | CrossRef Full Text | Google Scholar

Visvikis, O., Ihuegbu, N., Labed, S. A., Luhachack, L. G., Alves, A. F., Wollenberg, A. C., et al. (2014). Innate Host Defense Requires TFEB-Mediated Transcription of Cytoprotective and Antimicrobial Genes. Immunity 40 (6), 896–909. doi:10.1016/j.immuni.2014.05.002

PubMed Abstract | CrossRef Full Text | Google Scholar

Wang, C., Niederstrasser, H., Douglas, P. M., Lin, R., Jaramillo, J., Li, Y., et al. (2017). Small-molecule TFEB Pathway Agonists that Ameliorate Metabolic Syndrome in Mice and Extend C. elegans Lifespan. Nat. Commun. 8 (1), 2270. doi:10.1038/s41467-017-02332-3

PubMed Abstract | CrossRef Full Text | Google Scholar

Wang, S., Ni, H. M., Chao, X., Wang, H., Bridges, B., Kumer, S., et al. (2019). Impaired TFEB-Mediated Lysosomal Biogenesis Promotes the Development of Pancreatitis in Mice and Is Associated with Human Pancreatitis. Autophagy 15 (11), 1954–1969. doi:10.1080/15548627.2019.1596486

PubMed Abstract | CrossRef Full Text | Google Scholar

Xia, Y., Liu, N., Xie, X., Bi, G., Ba, H., Li, L., et al. (2019). The Macrophage-specific V-ATPase Subunit ATP6V0D2 Restricts Inflammasome Activation and Bacterial Infection by Facilitating Autophagosome-Lysosome Fusion. Autophagy 15 (6), 960–975. doi:10.1080/15548627.2019.1569916

PubMed Abstract | CrossRef Full Text | Google Scholar

Xu, C., Wang, W., Zhong, J., Lei, F., Xu, N., Zhang, Y., et al. (2018). Canagliflozin Exerts Anti-inflammatory Effects by Inhibiting Intracellular Glucose Metabolism and Promoting Autophagy in Immune Cells. Biochem. Pharmacol. 152, 45–59. doi:10.1016/j.bcp.2018.03.013

PubMed Abstract | CrossRef Full Text | Google Scholar

Xu, H., Yu, W., Sun, S., Li, C., Zhang, Y., and Ren, J. (2020a). Luteolin Attenuates Doxorubicin-Induced Cardiotoxicity through Promoting Mitochondrial Autophagy. Front. Physiol. 11, 113. doi:10.3389/fphys.2020.00113

PubMed Abstract | CrossRef Full Text | Google Scholar

Xu, J., Zhang, X. Q., and Zhang, Z. (2020b). Transcription Factor EB Agonists from Natural Products for Treating Human Diseases with Impaired Autophagy-Lysosome Pathway. Chin. Med. 15 (1), 123. doi:10.1186/s13020-020-00402-1

PubMed Abstract | CrossRef Full Text | Google Scholar

Yin, X., Xin, H., Mao, S., Wu, G., and Guo, L. (2019). The Role of Autophagy in Sepsis: Protection and Injury to Organs. Front. Physiol. 10, 1071. doi:10.3389/fphys.2019.01071

PubMed Abstract | CrossRef Full Text | Google Scholar

Yu, L., Chen, Y., and Tooze, S. A. (2018). Autophagy Pathway: Cellular and Molecular Mechanisms. Autophagy 14 (2), 207–215. doi:10.1080/15548627.2017.1378838

PubMed Abstract | CrossRef Full Text | Google Scholar

Zhang, H., Alsaleh, G., Feltham, J., Sun, Y., Napolitano, G., Riffelmacher, T., et al. (2019). Polyamines Control eIF5A Hypusination, TFEB Translation, and Autophagy to Reverse B Cell Senescence. Mol. Cel. 76 (1), 110–e9. e9. doi:10.1016/j.molcel.2019.08.005

PubMed Abstract | CrossRef Full Text | Google Scholar

Zhang, J., Wang, J., Wong, Y. K., Sun, X., Chen, Y., Wang, L., et al. (2018). Docetaxel Enhances Lysosomal Function through TFEB Activation. Cel Death Dis 9 (6), 614. doi:10.1038/s41419-018-0571-4

PubMed Abstract | CrossRef Full Text | Google Scholar

Zhang, J., Wang, J., Xu, J., Lu, Y., Jiang, J., Wang, L., et al. (2016). Curcumin Targets the TFEB-Lysosome Pathway for Induction of Autophagy. Oncotarget 7 (46), 75659–75671. doi:10.18632/oncotarget.12318

PubMed Abstract | CrossRef Full Text | Google Scholar

Zhou, Y., Zhou, X., Huang, X., Hong, T., Zhang, K., Qi, W., et al. (2021). Lysosome-Mediated Cytotoxic Autophagy Contributes to Tea Polysaccharide-Induced Colon Cancer Cell Death via mTOR-TFEB Signaling. J. Agric. Food Chem. 69 (2), 686–697. doi:10.1021/acs.jafc.0c07166

CrossRef Full Text | Google Scholar

Zhu, S. Y., Yao, R. Q., Li, Y. X., Zhao, P. Y., Ren, C., Du, X. H., et al. (2021). The Role and Regulatory Mechanism of Transcription Factor EB in Health and Diseases. Front. Cel Dev Biol 9, 667750. doi:10.3389/fcell.2021.667750

CrossRef Full Text | Google Scholar

Keywords: sepsis, TFEB, TFEB activators, autophagy-lysosomal pathway, inflammation, immunity

Citation: Liu X, Zheng X, Lu Y, Chen Q, Zheng J and Zhou H (2021) TFEB Dependent Autophagy-Lysosomal Pathway: An Emerging Pharmacological Target in Sepsis. Front. Pharmacol. 12:794298. doi: 10.3389/fphar.2021.794298

Received: 13 October 2021; Accepted: 05 November 2021;
Published: 26 November 2021.

Edited by:

Salvatore Salomone, University of Catania, Italy

Reviewed by:

Yang Chen, Guangzhou University of Chinese Medicine, China
Bo Pan, Wayne State University, United States

Copyright © 2021 Liu, Zheng, Lu, Chen, Zheng and Zhou. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Hong Zhou, emhvdWg2NEAxNjMuY29t Jiang Zheng, emhlbmdqOTkyMTlAMTYzLmNvbQ==

These authors have contributed equally to this work

Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.