AUTHOR=Du Qianqian , Liu Zhaoqiu , Wang Hongmei , Wang Yani , Liu Li , Wen Xuexia , Yu Sangjie , Ren Qingqing , Gonzalez Elisa , Arguedas Adriano , Fletcher Mark A. , Pan Kaijie , Morales Graciela Del Carmen , Deng Jikui , Yao Kaihu 

TITLE=Nasopharyngeal carriage of Streptococcus pneumoniae among children aged 30 days to <60 months in Beijing and Shenzhen, China (2018–2021) during pneumococcal conjugate vaccine introduction and the coronavirus disease (COVID-19) pandemic

JOURNAL=Frontiers in Pediatrics

VOLUME=12

YEAR=2024

URL=https://www.frontiersin.org/journals/pediatrics/articles/10.3389/fped.2024.1382165

DOI=10.3389/fped.2024.1382165

ISSN=2296-2360

ABSTRACT=<sec><title>Objectives</title><p>To describe the carriage rate, serotype distribution, and antimicrobial susceptibility patterns of <italic>Streptococcus pneumoniae</italic> (<italic>S. pneumoniae</italic>) nasopharyngeal (NP) isolates among healthy children aged 30 days to &lt;60 months in the cities of Beijing and Shenzhen during 2018–2021.</p></sec><sec><title>Methods</title><p>A NP swab sample was collected among four annual cohorts of healthy children at routine well-child visits. <italic>S. pneumoniae</italic> was identified by culture, optochin sensitivity and bile solubility, serotypes determined by latex agglutination and Quellung, and antimicrobial susceptibility testing performed using E-test strips.</p></sec><sec><title>Results</title><p><italic>S. pneumoniae</italic> NP carriage was 13.1% (645/4,911), with the highest <italic>S. pneumoniae</italic> carriage prevalence (15.3%) observed in 25 to &lt;60 months. The carriage prevalence was 15.1% in children 13–24 months, 13.2% in children 7–12 months, and 8.2% in children 30 days to 6 months (<italic>P</italic> &lt; 0.01). Living with siblings [20.0% vs. 9.4%: OR: 2.42 (95% CI: 2.05–2.87)] or attending day-care [31.8% vs. 11.3%: OR: 3.67 (95% CI: 2.94–4.57)] increased the risk (<italic>P</italic> &lt; 0.01). During the period (January 2020–April 2021) of strict non-pharmaceutical interventions to prevent and control the COVID-19 pandemic, the proportion of children with <italic>S. pneumoniae</italic> colonization declined from 16.0% (94/587) to 5.8% (108/1,848) in Beijing while increasing from 14.5% (64/443) to 18.6% (379/2,033) in Shenzhen. Among <italic>S. pneumoniae</italic> isolates, 36.7% (237/645) belonged to 13-valent pneumococcal conjugate vaccine (PCV13) serotypes, 64.3% (408/645) were non-PCV13 serotypes, including 20.8% (134/645) non-serotypeable <italic>S. pneumoniae</italic> (NST). A total of 158/644 isolates (24.5%) were MDR. For the PCV13 isolates, MDR was detected in 36.3% (86/237) of isolates; in comparison, 17.6% (72/407) of non-PCV13 serotypes, including NST, were MDR (<italic>P</italic> &lt; 0.01). <italic>S. pneumoniae</italic> NP carriage was detected in 10.7% of children with previous pneumococcal vaccination (PCV7 or PCV13 only) compared with 14.9% in children without previous pneumococcal vaccination.</p></sec><sec><title>Conclusions</title><p>The highest <italic>S. pneumoniae</italic> carriage prevalence were found in the oldest age group (25 to &lt;60 months) and in children living with siblings or attending day-care. Vaccination with PCV7 or PCV13 was associated with lower PCV13-serotype colonization. In Beijing, <italic>S. pneumoniae</italic> carriage significantly declined during the COVID-19 pandemic.</p></sec>