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ORIGINAL RESEARCH article

Front. Oncol.
Sec. Cancer Immunity and Immunotherapy
Volume 14 - 2024 | doi: 10.3389/fonc.2024.1417459
This article is part of the Research Topic Therapeutic Mechanism of Osteosarcoma View all 4 articles

Proteomic and transcriptomic analyses identify apo-transcobalamin-II as a biomarker of overall survival in osteosarcoma

Provisionally accepted
Ryan Lacinski Ryan Lacinski 1,2Sebastian Dziadowicz Sebastian Dziadowicz 3,4Clark Roth Clark Roth 5Li Ma Li Ma 3,4Vincent Melemai Vincent Melemai 2Brody Fitzpatrick Brody Fitzpatrick 2Edwin Chaharbakhshi Edwin Chaharbakhshi 2Tanya Heim Tanya Heim 5Ines Lohse Ines Lohse 5Karen Schoedel Karen Schoedel 5Gangqing Hu Gangqing Hu 3,4Nicolas Llosa Nicolas Llosa 6Kurt Weiss Kurt Weiss 5Brock Lindsey Brock Lindsey 6*
  • 1 Cancer Institute, West Virginia University, Morgantown, West Virginia, United States
  • 2 Department of Orthopaedics, West Virginia University School of Medicine, Morgantown, United States
  • 3 Department of Microbiology, Immunology and Cell Biology, School of Medicine, West Virginia University, Morgantown, West Virginia, United States
  • 4 Bioinformatics Core, West Virginia University School of Medicine, Morgantown, United States
  • 5 Department of Orthopaedic Surgery, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, United States
  • 6 Department of Orthopaedic Surgery, School of Medicine, Johns Hopkins Medicine, Baltimore, Maryland, United States

The final, formatted version of the article will be published soon.

    Background: The large-scale proteomic platform known as the SomaScan® assay is capable of simultaneously measuring thousands of proteins in patient specimens through next-generation aptamer-based multiplexed technology. While previous studies have utilized patient peripheral blood to suggest serum biomarkers of prognostic or diagnostic value in osteosarcoma (OSA), the most common primary pediatric bone cancer, they have ultimately been limited in the robustness of their analyses. We propose utilizing this aptamer-based technology to describe the systemic proteomic milieu in patients diagnosed with this disease. Methods: To determine novel biomarkers associated with overall survival in OSA, we deployed the SomaLogic SomaScan® 7k assay to investigate the plasma proteomic profile of naive primary, recurrent, and metastatic OSA patients. Following identification of differentially expressed proteins (DEPs) between 2-year deceased and survivor cohorts, publicly available databases including Survival Genie, TIGER, and KM Plotter Immunotherapy, among others, were utilized to investigate the significance of our proteomic findings. Results: Apo-transcobalamin-II (APO-TCN2) was identified as the most DEP between 2-year deceased and survivor cohorts (Log2 fold change = 6.8, P-value = 0.0017). Survival analysis using the Survival Genie web-based platform indicated that increased intratumoral TCN2 expression was associated with better overall survival in both OSA (TARGET-OS) and sarcoma (TCGA-SARC) datasets. Cell-cell communication analysis using the TIGER database suggested that TCN2+ Myeloid cells likely interact with marginal zone and immunoglobin-producing B lymphocytes expressing the TCN2 receptor (CD320) to promote their proliferation and survival in both non-small cell lung cancer and melanoma tumors. Analysis of publicly available OSA scRNA-sequencing datasets identified similar populations in naive primary tumors. Furthermore, circulating APO-TCN2 levels in OSA were then associated with a plasma proteomic profile likely necessary for robust B lymphocyte proliferation, infiltration, and formation of intratumoral tertiary lymphoid structures for improved anti-tumor immunity. Conclusions: Overall, APO-TCN2, a circulatory protein previously described in various lymphoproliferative disorders, was associated with 2-year survival status in patients diagnosed with OSA. The relevance of this protein and apparent immunological function (anti-tumor B lymphocyte responses) was suggested using publicly available solid tumor RNAsequencing datasets. Further studies characterizing the biological function of APO-TCN2 and its relevance in these diseases is warranted.

    Keywords: Osteosarcoma, Plasma, Proteomics, Transcobalamin-II, Immunotherapy

    Received: 15 Apr 2024; Accepted: 17 Sep 2024.

    Copyright: © 2024 Lacinski, Dziadowicz, Roth, Ma, Melemai, Fitzpatrick, Chaharbakhshi, Heim, Lohse, Schoedel, Hu, Llosa, Weiss and Lindsey. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Brock Lindsey, Department of Orthopaedic Surgery, School of Medicine, Johns Hopkins Medicine, Baltimore, 21205, Maryland, United States

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.