AUTHOR=Lin Yangui , Li Dan , Hui Hongliang , Miao Haoran , Luo Min , Roy Bhaskar , Chen Binbin , Zhang Wei , Shao Di , Ma Di , Jie Yanbing , Qiu Fan , Li Huaming , Jiang Bo 

TITLE=Genomic landscape and tumor mutational features of resected preinvasive to invasive lung adenocarcinoma

JOURNAL=Frontiers in Oncology

VOLUME=14

YEAR=2024

URL=https://www.frontiersin.org/journals/oncology/articles/10.3389/fonc.2024.1389618

DOI=10.3389/fonc.2024.1389618

ISSN=2234-943X

ABSTRACT=<sec><title>Introduction</title><p>Adenocarcinoma <italic>in situ</italic> (AIS) and minimally invasive adenocarcinoma (MIA) are considered pre-invasive forms of lung adenocarcinoma (LUAD) with a 5-year recurrence-free survival of 100%. We investigated genomic profiles in early tumorigenesis and distinguished mutational features of preinvasive to invasive adenocarcinoma (IAC) for early diagnosis.</p></sec><sec><title>Methods</title><p>Molecular information was obtained from a 689-gene panel in the 90 early-stage LUAD Chinese patients using next-generation sequencing. Gene signatures were identified between pathology subtypes, including AIS/MIA (n=31) and IAC (n=59) in this cohort. Mutational and clinicopathological information was also obtained from the Cancer Genome Atlas (TCGA) as a comparison cohort.</p></sec><sec><title>Results</title><p>A higher mutation frequency of <italic>TP53</italic>, <italic>RBM10</italic>, <italic>MUC1</italic>, <italic>CSMD</italic>, <italic>MED1</italic>, <italic>LRP1B</italic>, <italic>GLI1</italic>, <italic>MAP3K</italic>, and <italic>RYR2</italic> was observed in the IAC than in the AIS/MIA group. The AIS/MIA group showed higher mutation frequencies of <italic>ERBB2</italic>, <italic>BRAF</italic>, <italic>GRIN2A</italic>, and <italic>RB1</italic>. Comparable mutation rates for mutually exclusive genes (<italic>EGFR</italic> and <italic>KRAS</italic>) across cohorts highlight the critical transition to invasive LUAD. Compared with the TCGA cohort, <italic>EGFR, KRAS, TP53</italic>, and <italic>RBM10</italic> were frequently mutated in both cohorts. Despite limited gene mutation overlap between cohorts, we observed variant mutation types in invasive LUAD. Additionally, the tumor mutation burden (TMB) values were significantly lower in the AIS/MIA group than in the IAC group in both the Chinese cohort (P=0.0053) and TCGA cohort (P&lt;0.01).</p></sec><sec><title>Conclusion</title><p>These findings highlight the importance of distinguishing preinvasive from invasive LUAD in the early stages of LUAD and both pathology and molecular features in clinical practice, revealing genomic tumor heterogeneity and population differences.</p></sec>